Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 3.7e-191 671.4 341 100.0
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 9.4e-187 656.8 341 97.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.4e-182 642.1 328 98.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 6.5e-172 607.4 341 91.8
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 8.5e-172 607.1 338 90.5
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.5e-165 585.1 336 87.5
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.5e-163 579.7 338 87.0
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 8.0e-162 573.9 337 86.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 8.0e-162 573.9 337 86.1
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.8e-161 572.8 337 85.8
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.3e-161 572.4 337 85.5
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 5.2e-161 571.2 328 84.5
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.8e-161 570.9 338 85.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 3.4e-160 568.5 335 85.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.4e-160 568.5 328 85.4
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.8e-159 565.5 339 81.7
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.8e-159 565.5 328 85.1
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.7e-159 565.1 328 85.1
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.9e-159 564.7 328 85.1
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 6.3e-159 564.3 334 83.8
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 3.1e-158 562.0 328 83.5
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.1e-155 553.5 338 82.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.5e-155 552.4 317 85.2
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 9.5e-155 550.4 341 79.2
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.8e-153 546.2 329 81.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.3e-153 545.8 323 82.7
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.3e-153 545.8 328 81.7
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 3.0e-153 545.4 317 83.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.2e-152 543.5 338 80.5
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.5e-152 543.1 331 80.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.5e-152 543.1 339 80.5
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.5e-152 543.1 328 81.1
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.5e-152 543.1 328 81.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.5e-152 543.1 324 82.1
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.0e-152 542.7 341 78.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 2.0e-152 542.7 319 83.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-151 540.0 328 81.1
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.9e-151 538.9 334 79.3
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.7e-151 538.5 341 78.9
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 4.9e-151 538.1 322 80.4
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.4e-151 537.7 331 81.9
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 8.3e-151 537.3 335 78.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.1e-150 537.0 328 80.5
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.4e-150 535.8 338 78.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.1e-150 535.0 335 78.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 5.4e-150 534.6 331 80.1
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.0e-150 534.3 332 78.9
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.0e-150 534.3 331 79.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 9.2e-150 533.9 331 79.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.2e-149 533.5 330 79.1
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.0e-149 532.7 302 87.7
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.0e-149 532.7 324 81.5
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 5.9e-149 531.2 318 82.4
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.3e-148 530.0 323 79.3
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.5e-147 526.6 320 79.4
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.5e-147 526.6 325 79.4
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 4.3e-147 525.0 322 80.1
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 5.6e-147 524.6 331 78.2
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.3e-147 524.2 345 75.7
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.1e-146 522.7 338 76.6
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 2.1e-146 522.7 340 77.1
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.8e-146 522.3 375 70.9
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.6e-146 521.9 328 77.7
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.4e-145 520.0 373 72.1
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.8e-145 519.6 338 76.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 2.3e-145 519.2 336 76.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 5.2e-145 518.1 370 71.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 5.2e-145 518.1 338 77.5
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 5.2e-145 518.1 331 78.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.5e-144 516.5 330 77.0
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.5e-144 516.5 341 75.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.0e-144 516.2 334 76.0
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.0e-144 516.2 319 80.9
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-144 515.8 345 75.1
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 3.4e-144 515.4 327 76.8
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 5.8e-144 514.6 320 77.8
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 9.8e-144 513.8 341 74.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.2e-143 512.7 344 74.7
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.1e-142 510.4 338 74.6
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 3.2e-142 508.8 337 78.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.2e-141 506.9 397 67.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-141 506.5 333 74.5
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.7e-141 505.8 320 76.2
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.5e-141 505.4 322 76.4
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-140 503.4 323 78.6
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.7e-140 503.1 370 67.3
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-140 503.1 323 78.6
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 4.3e-139 498.4 315 77.1
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.6e-138 495.4 318 78.3
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 8.9e-137 490.7 328 74.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 4.4e-136 488.4 328 74.1
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 5.4e-134 481.5 327 70.3
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.5e-131 472.6 338 71.3
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 8.9e-129 464.2 349 67.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-127 460.3 320 70.6
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.7e-127 459.9 347 67.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 7.3e-123 444.5 335 66.9
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.5e-120 436.8 331 64.7
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 3.8e-119 432.2 250 84.0
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.7e-116 423.3 247 82.6
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.0e-116 422.5 246 84.1
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.1e-113 414.1 242 82.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 9.0e-113 411.0 247 78.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.1e-107 394.0 315 65.4
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.3e-107 392.5 329 62.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.3e-107 392.5 318 64.2
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 7.4e-107 391.3 362 60.5
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 6.2e-106 388.3 243 76.5
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 8.1e-106 387.9 338 63.6
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.2e-96 357.5 314 59.9
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 3.0e-92 342.8 232 75.4
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 2.6e-88 329.7 195 81.0
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.6e-75 286.6 215 72.1
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 5.2e-68 262.3 319 45.5
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 8.8e-68 261.5 182 69.8
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.7e-67 258.8 263 49.4
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 3.2e-62 243.0 358 43.3
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 4.0e-60 236.1 135 81.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 4.8e-58 229.2 138 80.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.4e-57 227.6 172 63.4
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.2e-53 214.5 128 78.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-41 174.5 130 68.5
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 4.1e-41 172.9 130 67.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 2.3e-39 167.2 120 70.0
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.0e-39 166.0 140 62.1
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-37 161.0 123 66.7
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-37 161.0 123 66.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 8.0e-37 158.7 123 65.9
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.8e-36 157.5 106 74.5
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-35 152.9 162 50.6
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-32 144.1 199 47.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.1e-30 138.3 106 64.2
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 4.9e-26 122.9 73 82.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-25 120.9 93 65.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.1e-22 111.7 197 42.1
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 9.5e-22 108.6 80 65.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 6.8e-20 102.4 65 81.5
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.5e-19 101.3 76 64.5
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.6e-19 100.5 66 77.3
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 2.6e-19 100.5 61 80.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.7e-18 96.7 67 71.6
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.1e-17 93.2 87 59.8
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 3.4e-11 73.6 51 70.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 5.8e-11 72.8 50 72.0
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 7.6e-11 72.4 52 65.4
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.2e-08 65.1 54 61.1
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 1.6e-08 64.7 60 61.7
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 4.3e-06 56.6 164 28.0


User provided reference genes

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