Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 3.4e-272 941.0 467 100.0
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.6e-224 781.9 468 83.5
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.5e-216 755.0 471 80.7
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.5e-203 713.0 467 76.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.7e-202 709.5 471 77.3
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.2e-202 709.1 471 77.3
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.4e-201 705.7 480 75.0
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 8.3e-186 654.1 469 72.7
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.1e-158 563.9 479 60.8
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.4e-148 529.6 305 87.9
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.0e-118 430.3 310 71.0
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 4.7e-104 382.5 512 46.3
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.8e-103 380.6 495 45.9
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.5e-102 377.5 491 46.2
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.4e-102 376.3 505 46.7
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.4e-102 375.9 507 45.6
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 9.8e-102 374.8 505 46.5
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.8e-101 372.5 508 44.7
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 4.1e-100 369.4 483 46.4
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 7.0e-100 368.6 495 47.3
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.7e-98 364.0 495 45.1
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 8.5e-98 361.7 496 45.8
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.4e-95 354.4 473 45.2
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.4e-95 354.4 508 43.1
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.2e-94 351.3 515 41.9
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.5e-94 350.9 487 43.5
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 3.4e-94 349.7 506 41.9
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 7.5e-94 348.6 487 43.1
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.7e-93 347.4 512 42.2
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 4.9e-93 345.9 497 42.7
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.1e-92 344.7 491 43.2
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 5.4e-92 342.4 486 42.8
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 9.1e-92 341.7 168 98.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.2e-91 341.3 486 42.8
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.7e-91 340.1 504 42.3
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.3e-90 337.0 509 41.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.9e-90 336.7 500 42.0
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 5.0e-90 335.9 507 40.6
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 8.6e-90 335.1 497 41.9
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 4.2e-89 332.8 488 41.4
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.2e-88 331.3 465 43.0
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.1e-88 330.5 399 46.9
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.1e-88 330.5 492 40.9
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.1e-88 330.5 491 41.1
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.8e-88 330.1 399 46.6
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.6e-88 329.7 399 46.4
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.0e-87 328.2 436 44.5
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.0e-87 328.2 496 44.4
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.3e-87 327.0 520 40.0
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.3e-87 327.0 496 41.5
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 2.3e-87 327.0 485 41.9
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 3.0e-87 326.6 522 39.8
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 3.0e-87 326.6 502 43.2
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 4.0e-87 326.2 493 40.4
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.2e-87 325.9 398 46.0
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.2e-87 325.9 429 47.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 5.2e-87 325.9 500 41.8
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.5e-86 324.3 501 41.7
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.6e-86 323.6 493 42.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.6e-86 323.6 493 42.6
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.4e-86 323.2 167 94.0
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 3.4e-86 323.2 505 40.8
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.7e-86 322.4 493 41.2
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.5e-86 322.0 491 43.4
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.3e-85 321.2 497 42.3
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.3e-85 321.2 500 41.2
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.7e-85 319.7 493 42.2
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.9e-85 319.3 448 44.0
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 8.3e-85 318.5 465 42.4
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.4e-84 317.8 504 40.9
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.8e-84 317.4 495 39.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.4e-84 317.0 493 42.2
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 3.2e-84 316.6 510 41.0
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 9.2e-84 315.1 501 39.9
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 4.6e-83 312.8 499 40.9
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 4.6e-83 312.8 484 43.4
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 4.6e-83 312.8 502 39.4
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 5.9e-83 312.4 489 41.3
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 7.8e-83 312.0 486 43.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-82 311.6 471 43.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-82 311.6 471 43.9
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.9e-82 309.7 457 43.8
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 4.3e-81 306.2 411 45.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.2e-80 304.7 483 39.8
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 2.1e-80 303.9 491 40.7
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.1e-80 303.9 504 40.5
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 2.1e-80 303.9 497 39.4
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.8e-80 303.5 499 39.9
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.7e-80 302.8 167 86.8
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 5.2e-79 299.3 501 39.1
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.0e-78 297.4 455 41.3
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 9.8e-78 295.0 452 42.3
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 9.8e-78 295.0 435 44.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.7e-77 294.3 412 44.4
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.2e-77 293.9 414 43.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.9e-77 293.5 481 40.1
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 3.7e-77 293.1 389 42.4
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 6.4e-77 292.4 488 41.0
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.1e-76 291.6 412 42.5
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.4e-76 291.2 473 40.4
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.4e-76 291.2 498 39.4
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 9.2e-76 288.5 489 40.7
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.0e-75 287.3 387 43.7
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 7.8e-75 285.4 505 39.6
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 2.3e-74 283.9 447 42.3
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 3.9e-74 283.1 490 38.6
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.9e-73 280.8 482 39.6
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.3e-73 280.0 483 39.1
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.1e-72 277.3 476 37.2
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.3e-71 273.9 349 46.4
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 6.8e-71 272.3 393 40.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.5e-70 271.2 496 36.5
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 2.6e-70 270.4 395 41.3
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.4e-70 270.0 512 36.3
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.3e-69 268.1 424 39.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.7e-69 267.7 375 42.4
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.4e-68 264.6 332 47.6
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.2e-68 263.5 447 37.4
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 2.1e-67 260.8 463 39.3
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 5.1e-66 256.1 404 40.8
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.5e-65 254.6 289 49.1
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 6.2e-64 249.2 482 35.5
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 4.0e-63 246.5 521 35.3
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.8e-62 242.7 465 36.1
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.2e-61 240.7 491 33.0
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 6.4e-61 239.2 493 34.7
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 6.4e-61 239.2 465 35.9
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 5.4e-60 236.1 350 38.0
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.7e-59 233.8 374 40.6
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.3e-58 231.5 447 36.5
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.9e-57 227.6 211 53.6
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 3.3e-57 226.9 213 53.5
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 8.1e-56 222.2 210 54.3
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-53 214.5 432 32.9
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.8e-51 205.7 428 32.7
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.0e-50 205.3 420 35.2
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.6e-50 202.6 468 32.3
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-49 201.1 425 34.1
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 2.5e-49 200.7 214 50.5
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.1e-44 185.3 448 31.2
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.6e-43 179.9 437 31.6
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.1e-42 176.4 391 33.0
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 4.8e-40 169.9 164 50.0
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.9e-36 157.9 180 49.4
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.9e-36 157.9 180 49.4
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 7.1e-36 156.0 456 29.6
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.4e-31 141.7 169 45.0
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.0e-31 140.2 419 28.2
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-28 132.1 109 56.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.1e-24 117.9 153 43.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-23 114.8 255 34.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-23 114.8 255 34.9
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 4.3e-17 93.6 216 32.9
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.1e-09 68.9 114 37.7
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 8.2e-08 62.8 234 28.2


User provided reference genes

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