Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 5.3e-70 267.7 148 100.0
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 7.4e-64 247.3 148 93.9
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 6.5e-60 234.2 148 91.2
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.6e-58 229.6 148 90.5
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 2.1e-58 229.2 148 87.8
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 2.6e-56 222.2 148 87.8
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 2.2e-55 219.2 148 89.2
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 1.2e-53 213.4 148 87.8
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 1.2e-53 213.4 148 87.8
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 1.2e-53 213.4 148 87.8
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-50 202.6 150 83.3
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-49 199.9 148 84.5
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 5.2e-49 198.0 148 83.8
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 1.2e-48 196.8 148 83.8
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 2.6e-48 195.7 151 83.4
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 9.8e-48 193.7 145 81.4
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 1.3e-47 193.4 150 83.3
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 1.3e-47 193.4 150 83.3
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 4.7e-42 174.9 145 76.6
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 4.4e-40 168.3 179 66.5
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 4.1e-38 161.8 113 83.2
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 5.6e-35 151.4 155 68.4
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 5.8e-32 141.4 150 60.7
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 1.1e-30 137.1 138 60.1
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 3.5e-29 132.1 152 60.5
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 2.3e-28 129.4 149 55.7
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 3.0e-28 129.0 156 56.4
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 6.6e-28 127.9 156 56.4
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 8.6e-28 127.5 149 55.7
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 1.9e-27 126.3 142 57.7
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 2.5e-27 125.9 156 55.8
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.5e-27 125.9 149 53.0
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 3.3e-27 125.6 148 61.5
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 3.3e-27 125.6 137 56.2
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 5.6e-27 124.8 142 57.0
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 7.3e-27 124.4 118 63.6
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 1.2e-26 123.6 174 50.6
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 1.6e-26 123.2 148 55.4
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.1e-26 122.9 151 55.6
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 2.8e-26 122.5 149 54.4
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 4.7e-26 121.7 149 58.4
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 6.2e-26 121.3 145 55.9
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.1e-25 120.6 149 54.4
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 1.1e-25 120.6 144 54.9
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 1.4e-25 120.2 155 54.2
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 2.3e-25 119.4 152 55.3
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.3e-25 119.4 152 55.3
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.3e-25 119.4 152 55.3
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.3e-25 119.4 152 55.3
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 4.0e-25 118.6 145 55.2
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 5.2e-25 118.2 153 54.2
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 8.9e-25 117.5 105 65.7
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 8.9e-25 117.5 145 54.5
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 8.9e-25 117.5 145 53.1
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 8.9e-25 117.5 158 53.2
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 1.2e-24 117.1 156 51.3
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.2e-24 117.1 142 52.8
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 1.5e-24 116.7 140 55.7
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 2.0e-24 116.3 148 54.1
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 2.0e-24 116.3 139 54.7
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 2.6e-24 115.9 92 71.7
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 4.4e-24 115.2 142 54.2
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 4.4e-24 115.2 90 68.9
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.8e-24 114.8 134 55.2
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 5.8e-24 114.8 145 52.4
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 7.5e-24 114.4 161 52.8
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 7.5e-24 114.4 140 52.9
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 7.5e-24 114.4 113 62.8
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.3e-23 113.6 149 51.0
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.7e-23 113.2 142 55.6
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 2.2e-23 112.8 129 58.1
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.2e-23 112.8 148 52.0
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 2.9e-23 112.5 150 50.7
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 3.7e-23 112.1 152 52.6
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.7e-23 112.1 131 53.4
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 3.7e-23 112.1 136 55.9
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.7e-23 112.1 151 52.3
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 4.9e-23 111.7 145 51.7
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 6.4e-23 111.3 151 51.0
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 6.4e-23 111.3 109 63.3
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 8.3e-23 110.9 151 53.0
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.1e-22 110.5 144 50.7
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.1e-22 110.5 151 54.3
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.9e-22 109.8 137 51.1
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 2.4e-22 109.4 144 51.4
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.4e-22 109.4 93 65.6
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 2.4e-22 109.4 133 54.1
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.4e-22 109.4 144 50.7
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 3.2e-22 109.0 152 50.7
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 4.1e-22 108.6 114 61.4
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 4.1e-22 108.6 148 49.3
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 4.1e-22 108.6 154 50.6
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 4.1e-22 108.6 108 58.3
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 4.1e-22 108.6 148 52.0
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 5.4e-22 108.2 142 47.9
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 1.2e-21 107.1 95 66.3
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 1.6e-21 106.7 148 50.7
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 2.1e-21 106.3 130 53.1
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.1e-21 106.3 87 67.8
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 2.1e-21 106.3 145 49.7
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.7e-21 105.9 153 49.0
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 2.7e-21 105.9 105 59.0
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 3.5e-21 105.5 148 50.0
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 3.5e-21 105.5 146 52.7
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 3.5e-21 105.5 119 54.6
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 4.6e-21 105.1 180 46.1
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 6.0e-21 104.8 129 50.4
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 6.0e-21 104.8 142 49.3
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 7.8e-21 104.4 132 52.3
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 7.8e-21 104.4 148 48.0
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.0e-20 104.0 128 53.1
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 1.3e-20 103.6 101 64.4
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 1.7e-20 103.2 147 49.0
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.3e-20 102.8 141 48.9
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 5.1e-20 101.7 145 46.2
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 5.1e-20 101.7 135 51.9
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 8.6e-20 100.9 144 48.6
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 8.6e-20 100.9 143 48.3
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 8.6e-20 100.9 147 48.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.1e-19 100.5 116 56.0
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 1.5e-19 100.1 106 62.3
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 2.5e-19 99.4 143 48.3
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 3.3e-19 99.0 93 63.4
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 3.3e-19 99.0 156 49.4
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 3.3e-19 99.0 155 44.5
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 4.3e-19 98.6 141 48.9
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 4.3e-19 98.6 153 46.4
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 5.6e-19 98.2 142 49.3
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 5.6e-19 98.2 108 57.4
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 7.3e-19 97.8 105 59.0
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 6.2e-18 94.7 74 64.9
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.2e-18 94.7 149 46.3
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 6.2e-18 94.7 147 47.6
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 1.1e-17 94.0 105 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 2.3e-17 92.8 72 70.8
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 3.1e-17 92.4 113 55.8
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 5.2e-17 91.7 134 48.5
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 5.2e-17 91.7 133 48.1
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 6.8e-17 91.3 103 55.3
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 6.8e-17 91.3 95 58.9
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 6.8e-17 91.3 97 57.7
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 1.2e-16 90.5 100 55.0
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 1.2e-16 90.5 88 62.5
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 1.2e-16 90.5 162 46.3
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 2.6e-16 89.4 194 41.2
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 2.6e-16 89.4 114 51.8
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.4e-16 89.0 142 45.1
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 4.4e-16 88.6 161 41.0
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 9.9e-16 87.4 96 53.1
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 1.3e-15 87.0 85 60.0
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 1.7e-15 86.7 109 51.4
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 2.2e-15 86.3 110 50.9
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.2e-15 86.3 95 57.9
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 1.1e-14 84.0 99 52.5
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 1.1e-14 84.0 101 52.5
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 4.1e-14 82.0 76 60.5
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 5.4e-14 81.6 193 35.2
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 5.4e-14 81.6 46 87.0
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 2.1e-13 79.7 58 67.2
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 4.4e-08 62.0 78 51.3
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 4.9e-07 58.5 120 37.5
C04p55220 Brassica napus HOM05D004404 ORTHO05D005070 6.4e-07 58.2 73 54.8
BolC4t27061H Brassica oleracea HOM05D000230 ORTHO05D005070 6.4e-07 58.2 73 54.8
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 1.4e-06 57.0 84 38.1
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 1.4e-06 57.0 84 39.3
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 3.2e-06 55.8 100 38.0
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 3.2e-06 55.8 111 38.7
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 4.2e-06 55.5 60 41.7
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 5.4e-06 55.1 68 39.7
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 5.4e-06 55.1 90 37.8
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 7.1e-06 54.7 105 41.9
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 7.1e-06 54.7 90 38.9
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 9.2e-06 54.3 127 33.1
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 9.2e-06 54.3 90 36.7


User provided reference genes

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