Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.7e-247 858.2 436 100.0
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.1e-229 799.7 436 93.6
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 7.0e-219 763.8 437 88.8
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.7e-212 741.5 442 86.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 3.1e-211 738.4 442 85.7
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.4e-206 723.0 401 90.8
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 9.8e-205 716.8 442 82.8
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.8e-204 715.3 442 82.8
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 8.3e-204 713.8 442 82.8
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.8e-203 712.6 442 82.8
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.8e-203 712.6 442 82.8
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 6.8e-198 694.1 442 81.4
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.7e-196 688.3 441 79.1
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 6.4e-172 607.8 442 69.9
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 5.6e-168 594.7 444 69.6
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.2e-167 593.6 449 68.2
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.1e-166 590.5 449 67.7
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 3.1e-166 589.0 446 67.3
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 8.9e-166 587.4 448 68.1
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 1.5e-165 586.6 451 67.2
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 5.8e-165 584.7 456 66.4
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 3.2e-163 578.9 440 68.0
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 7.1e-163 577.8 449 67.0
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 7.1e-163 577.8 449 67.0
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 2.1e-162 576.2 448 67.9
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.3e-161 573.5 446 66.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 9.9e-157 557.4 445 66.1
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.4e-142 510.4 451 60.5
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 5.8e-141 505.0 406 63.5
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 5.8e-141 505.0 458 60.7
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.3e-140 503.8 432 61.8
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.7e-140 503.4 460 59.1
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 2.2e-140 503.1 442 60.9
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.5e-139 498.4 406 63.3
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 5.5e-139 498.4 457 59.3
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 2.7e-138 496.1 454 60.8
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.0e-138 495.0 406 62.8
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.5e-136 489.6 446 59.4
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 7.4e-136 488.0 432 60.4
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 1.3e-135 487.3 450 60.4
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-135 487.3 449 58.6
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 4.8e-135 485.3 451 59.9
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 8.2e-135 484.6 447 58.2
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-134 483.8 448 58.3
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 3.1e-134 482.6 405 62.0
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.4e-133 479.2 449 58.1
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 1.7e-132 476.9 442 58.4
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 2.2e-132 476.5 438 58.0
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.1e-131 474.2 449 57.5
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.4e-131 473.8 442 57.7
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 3.2e-131 472.6 456 58.1
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 9.3e-131 471.1 456 58.1
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.6e-130 470.3 446 58.7
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 2.1e-130 469.9 407 59.5
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 6.1e-130 468.4 435 58.2
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 5.1e-129 465.3 451 58.3
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.1e-128 464.2 394 61.7
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.9e-128 463.4 388 62.4
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 2.5e-128 463.0 408 58.6
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 3.3e-128 462.6 450 57.8
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.3e-127 460.7 435 56.8
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.6e-127 460.3 412 59.2
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 1.5e-125 453.8 393 59.5
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 2.0e-125 453.4 456 54.2
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.0e-124 451.1 415 59.3
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 7.2e-123 444.9 393 58.3
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 5.1e-121 438.7 426 57.5
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 6.7e-121 438.3 441 55.3
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 6.7e-121 438.3 408 55.6
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.7e-121 438.3 439 55.1
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.4e-118 430.6 421 56.1
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 5.9e-117 425.2 453 51.7
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 5.9e-117 425.2 394 55.6
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.7e-116 423.7 392 56.9
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.2e-114 417.5 394 55.3
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.4e-113 414.1 423 53.0
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.8e-113 413.7 452 50.4
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 2.3e-113 413.3 452 50.4
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.1e-112 411.0 437 51.7
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 2.0e-112 410.2 415 53.0
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.6e-112 409.8 399 57.6
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 3.3e-112 409.5 438 51.4
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.7e-112 407.9 447 52.3
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.8e-111 406.4 447 52.3
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 1.4e-110 404.1 426 52.1
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 3.5e-109 399.4 388 53.6
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 8.5e-108 394.8 457 48.6
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 8.5e-108 394.8 379 55.4
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 5.5e-107 392.1 459 48.6
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 6.1e-106 388.7 406 51.0
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.0e-105 386.3 389 53.5
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 2.6e-104 383.3 329 59.9
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 1.7e-103 380.6 395 51.1
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 6.3e-103 378.6 385 51.9
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.1e-102 377.9 385 51.9
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 7.0e-102 375.2 418 48.6
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 7.0e-102 375.2 344 58.7
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 6.5e-100 368.6 446 46.4
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 7.2e-99 365.2 420 49.8
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 7.0e-94 348.6 463 48.4
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.0e-93 347.1 374 50.3
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 4.2e-91 339.3 349 52.7
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 5.5e-91 339.0 291 62.2
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 2.1e-90 337.0 397 48.9
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 6.1e-90 335.5 348 52.3
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 4.0e-81 306.2 411 44.8
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 2.6e-80 303.5 376 47.1
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.6e-74 283.1 337 49.9
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.7e-74 282.7 356 48.6
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 3.4e-72 276.6 412 40.8
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 4.9e-71 272.7 396 42.9
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 4.1e-70 269.6 253 58.1
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.5e-64 251.1 438 43.8
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 2.0e-64 250.8 166 69.9
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 7.5e-64 248.8 229 59.4
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.0e-60 238.4 257 55.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.6e-58 231.1 393 39.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 6.2e-58 229.2 256 48.8
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.2e-53 214.9 393 36.4
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 6.0e-53 212.6 392 37.2
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 3.6e-50 203.4 404 36.6
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.7e-23 114.8 409 27.9
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.8e-23 113.6 232 32.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 3.3e-19 100.5 164 39.0
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.5e-14 83.2 157 33.1
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 9.3e-14 82.4 80 50.0
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 3.3e-11 73.9 111 43.2
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 4.3e-11 73.6 425 24.5
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 9.0e-09 65.9 83 44.6


User provided reference genes

Program Settings