Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.5e-102 375.6 205 100.0
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 6.8e-100 367.5 205 98.0
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 6.4e-82 307.8 199 86.4
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.3e-79 300.1 199 84.4
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 5.1e-79 298.1 202 85.1
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.1e-78 297.0 202 84.7
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 2.5e-78 295.8 202 84.7
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 6.2e-77 291.2 202 82.7
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.5e-75 286.6 202 82.2
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 3.4e-75 285.4 202 83.2
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 3.2e-73 278.9 201 80.1
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 4.2e-73 278.5 200 80.5
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 4.2e-73 278.5 204 79.9
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 4.2e-73 278.5 200 80.5
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.7e-72 275.8 202 79.7
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 2.7e-72 275.8 199 80.9
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 3.5e-72 275.4 204 79.4
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 8.1e-69 264.2 202 75.2
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.1e-68 263.8 184 82.1
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.1e-68 263.8 202 76.2
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.4e-67 258.8 202 75.7
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.0e-60 234.2 140 91.4
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 1.3e-53 213.8 203 61.6
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.7e-53 212.2 203 59.6
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 8.2e-53 211.1 203 59.1
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 1.8e-52 209.9 205 62.0
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 3.1e-52 209.1 207 59.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.3e-52 208.4 203 62.1
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 9.1e-52 207.6 202 60.9
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.6e-51 206.1 203 58.6
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.6e-51 206.1 203 58.6
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.9e-51 204.9 203 60.1
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 5.9e-51 204.9 203 58.6
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.0e-50 204.1 203 60.1
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.0e-50 204.1 203 60.1
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.2e-50 203.0 203 59.6
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 2.2e-50 203.0 203 59.6
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 2.9e-50 202.6 203 59.6
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.8e-50 202.2 203 58.1
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 6.5e-50 201.4 204 59.8
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 6.5e-50 201.4 207 58.0
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 6.5e-50 201.4 204 60.3
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 8.5e-50 201.1 204 59.8
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 8.5e-50 201.1 203 60.1
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.5e-50 201.1 203 59.6
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 1.4e-49 200.3 203 59.6
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.5e-49 199.5 203 58.6
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 3.2e-49 199.1 203 58.1
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 4.2e-49 198.7 202 59.4
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.2e-48 197.2 203 56.7
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.6e-48 196.8 205 60.0
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.6e-48 196.8 202 57.4
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 2.1e-48 196.4 203 58.1
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 2.1e-48 196.4 203 57.1
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 3.6e-48 195.7 203 57.1
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 4.6e-48 195.3 205 59.0
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 4.6e-48 195.3 203 56.7
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 7.9e-48 194.5 203 57.1
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.0e-47 194.1 202 57.4
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 2.3e-47 193.0 203 58.6
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.3e-47 193.0 201 58.7
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 3.9e-47 192.2 206 59.2
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 3.9e-47 192.2 203 57.6
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 6.7e-47 191.4 205 57.6
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.8e-47 191.0 199 59.3
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.8e-47 191.0 199 59.3
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 8.8e-47 191.0 204 58.8
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 2.0e-46 189.9 202 56.9
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 3.3e-46 189.1 203 57.6
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 5.7e-46 188.3 232 53.4
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 9.7e-46 187.6 202 55.4
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.7e-45 186.8 203 58.6
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 1.7e-45 186.8 203 55.7
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.7e-45 186.8 203 56.7
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.7e-45 186.8 203 58.1
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.7e-45 185.7 203 55.7
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 6.3e-45 184.9 200 56.5
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 6.3e-45 184.9 203 57.6
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 1.4e-44 183.7 202 54.5
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.8e-44 183.3 204 55.9
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 1.8e-44 183.3 204 55.4
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 2.4e-44 183.0 204 56.4
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 4.1e-44 182.2 201 57.2
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 4.1e-44 182.2 201 55.2
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 1.2e-43 180.6 204 55.4
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 1.5e-43 180.3 205 56.6
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 2.0e-43 179.9 203 55.2
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 3.4e-43 179.1 203 55.7
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 4.5e-43 178.7 208 53.8
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 5.9e-43 178.3 201 55.2
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 5.9e-43 178.3 201 55.7
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.7e-43 177.9 203 54.2
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.7e-43 177.9 203 54.2
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 7.7e-43 177.9 211 55.0
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 7.7e-43 177.9 203 54.7
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.3e-42 177.2 206 55.8
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.3e-42 177.2 203 54.7
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 2.2e-42 176.4 204 53.9
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.9e-42 176.0 203 54.2
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 8.5e-42 174.5 198 56.6
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 1.4e-41 173.7 203 55.2
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.9e-41 173.3 204 54.4
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 2.5e-41 172.9 203 53.2
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 2.5e-41 172.9 267 46.1
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 4.2e-41 172.2 206 51.0
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 5.5e-41 171.8 204 54.4
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 9.4e-41 171.0 205 51.2
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 9.4e-41 171.0 198 54.0
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.6e-40 170.2 200 53.5
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 2.1e-40 169.9 215 48.8
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 7.9e-40 167.9 203 51.2
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.8e-39 166.8 200 55.5
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 3.0e-39 166.0 198 55.6
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 3.9e-39 165.6 240 46.2
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.5e-38 163.7 202 52.0
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 2.6e-38 162.9 202 52.0
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 3.3e-38 162.5 193 54.9
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 4.4e-38 162.2 199 51.3
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 4.4e-38 162.2 203 49.8
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 1.3e-37 160.6 197 54.3
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 3.7e-37 159.1 186 52.2
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.4e-36 157.1 198 51.5
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.8e-36 156.8 203 51.7
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.3e-36 155.2 204 49.5
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 7.0e-36 154.8 177 55.9
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 2.6e-35 152.9 261 41.8
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 7.7e-35 151.4 201 50.7
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 2.9e-34 149.4 227 46.3
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.0e-34 148.7 179 53.6
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.0e-34 148.7 203 49.3
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.0e-34 148.7 203 49.3
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 2.5e-33 146.4 203 48.8
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 5.5e-33 145.2 186 53.8
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 1.8e-31 140.2 187 48.7
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.8e-31 137.9 189 47.6
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.5e-30 137.1 163 53.4
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 1.3e-29 134.0 165 52.7
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.2e-29 133.3 189 46.6
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.8e-29 132.1 189 46.6
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.1e-28 131.0 171 47.4
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 1.8e-28 130.2 113 69.0
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 3.1e-28 129.4 201 47.8
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 4.1e-28 129.0 203 46.3
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 1.0e-26 124.4 287 35.2
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.3e-26 124.0 167 49.7
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.7e-26 123.6 113 61.9
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 8.5e-26 121.3 193 45.6
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.1e-25 120.9 198 40.4
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 8.0e-24 114.8 196 43.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 1.0e-23 114.4 112 60.7
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.8e-23 111.7 93 67.7
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 8.8e-23 111.3 87 74.7
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.8e-23 111.3 144 49.3
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 1.2e-22 110.9 146 50.0
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 7.5e-22 108.2 146 47.3
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.2e-21 106.7 83 73.5
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 2.8e-21 106.3 147 49.7
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.8e-21 105.5 199 41.2
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 8.3e-21 104.8 158 45.6
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.8e-20 103.6 143 44.8
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.1e-20 102.4 191 40.8
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 5.4e-20 102.1 82 68.3
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.4e-20 102.1 134 47.0
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 5.9e-19 98.6 120 55.0
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 7.7e-19 98.2 196 38.3
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 2.3e-18 96.7 141 46.8
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 4.2e-17 92.4 226 35.4
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 5.5e-17 92.0 60 81.7
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.5e-17 91.3 172 40.7
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.3e-15 86.7 215 33.5
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.6e-14 83.2 198 34.8
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 9.8e-14 81.3 122 47.5
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 4.1e-12 75.9 132 43.9
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 1.2e-11 74.3 77 59.7
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 4.5e-11 72.4 196 28.6
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.0e-10 71.2 148 39.9
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 1.9e-09 67.0 42 78.6
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 3.3e-09 66.2 51 70.6
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 1.6e-08 63.9 150 38.0
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.1e-08 62.0 37 83.8
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 4.0e-07 59.3 151 33.8


User provided reference genes

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