Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G39880 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 4.2e-50 201.1 102 100.0
AL3G44190 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 1.6e-49 199.1 102 99.0
AL1G49220 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 1.0e-48 196.4 102 98.0
AL2G19500 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 5.2e-48 194.1 102 96.1
AL6G21260 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 2.8e-22 108.6 69 84.1
AT5G10720 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 1.4e-21 106.3 57 93.0
Carub.0006s0919 Capsella rubella HOM05D000372 ORTHO05D003436 3.8e-19 98.2 69 75.4
Thhalv10012606m.g Eutrema salsugineum HOM05D000372 ORTHO05D003436 3.8e-19 98.2 57 87.7
CARHR202600 Cardamine hirsuta HOM05D000372 ORTHO05D003436 2.5e-18 95.5 57 84.2
A10p26890 Brassica napus HOM05D000372 ORTHO05D003436 9.5e-18 93.6 57 82.5
C09p66090 Brassica napus HOM05D000372 ORTHO05D003436 9.5e-18 93.6 57 82.5
BolC9t59429H Brassica oleracea HOM05D000372 ORTHO05D003436 9.5e-18 93.6 57 82.5
BraA10t44741Z Brassica rapa HOM05D000372 ORTHO05D003436 9.5e-18 93.6 57 82.5
Sp6g32740 Schrenkiella parvula HOM05D000372 ORTHO05D003436 2.1e-17 92.4 57 82.5
A03p04730 Brassica napus HOM05D000372 ORTHO05D003436 2.8e-17 92.0 57 78.9
BcaC04g19290 Brassica carinata HOM05D000372 ORTHO05D003436 3.6e-17 91.7 57 80.7
BraA03t09813Z Brassica rapa HOM05D000372 ORTHO05D003436 3.6e-17 91.7 57 78.9
BcaC03g13326 Brassica carinata HOM05D000372 ORTHO05D003436 6.1e-17 90.9 57 78.9
A02p00610 Brassica napus HOM05D000372 ORTHO05D003436 6.1e-17 90.9 57 78.9
BolC2t06420H Brassica oleracea HOM05D000372 ORTHO05D003436 6.1e-17 90.9 57 78.9
BraA02t05044Z Brassica rapa HOM05D000372 ORTHO05D003436 6.1e-17 90.9 57 78.9
BcaB08g37314 Brassica carinata HOM05D000372 ORTHO05D003436 1.0e-16 90.1 57 78.9
BcaB05g21500 Brassica carinata HOM05D000372 ORTHO05D003436 1.4e-16 89.7 57 77.2
BcaB01g05503 Brassica carinata HOM05D000372 ORTHO05D003436 1.8e-16 89.4 57 77.2
C03p05430 Brassica napus HOM05D000372 ORTHO05D003436 1.8e-16 89.4 57 77.2
BolC3t13054H Brassica oleracea HOM05D000372 ORTHO05D003436 1.8e-16 89.4 57 77.2
BcaB01g06275 Brassica carinata HOM05D000372 ORTHO05D003436 1.2e-15 86.7 58 77.6
C02p04600 Brassica napus HOM05D000372 ORTHO05D003436 2.6e-15 85.5 57 75.4
BcaB01g06273 Brassica carinata HOM05D000372 ORTHO05D003436 4.4e-15 84.7 71 63.4
THA.LOC104803327 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 2.9e-14 82.0 57 68.4
Sp2g22540 Schrenkiella parvula HOM05D000372 ORTHO05D003436 5.4e-13 77.8 57 71.9
Aa31LG3G16390 Aethionema arabicum HOM05D000372 ORTHO05D003436 9.2e-13 77.0 55 70.9
Aa31LG3G16410 Aethionema arabicum HOM05D000372 ORTHO05D003436 1.6e-12 76.3 54 68.5
Sp2g06120 Schrenkiella parvula HOM05D000372 ORTHO05D003436 4.6e-12 74.7 57 71.9
A03p04720 Brassica napus HOM05D000372 ORTHO05D003436 7.8e-12 73.9 57 66.7
BraA03t09812Z Brassica rapa HOM05D000372 ORTHO05D003436 7.8e-12 73.9 57 66.7
Manes.03G005600 Manihot esculenta HOM05D000372 ORTHO05D003436 1.6e-09 66.2 70 44.3
Manes.16G133700 Manihot esculenta HOM05D000372 ORTHO05D003436 4.7e-09 64.7 53 50.9
Ciclev10010162m.g Citrus clementina HOM05D000372 ORTHO05D003436 6.2e-09 64.3 70 44.3
AL6G21200 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 1.1e-08 63.5 70 58.6
Potri.018G011400 Populus trichocarpa HOM05D000372 ORTHO05D003436 1.1e-08 63.5 53 54.7
Duzib187G1714 Durio zibethinus HOM05D000372 ORTHO05D003436 4.0e-08 61.6 53 50.9
MD15G1046500 Malus domestica HOM05D000372 ORTHO05D003436 4.0e-08 61.6 56 48.2
COL.COLO4_19011 Corchorus olitorius HOM05D000372 ORTHO05D003436 6.8e-08 60.8 53 50.9
CsaV3_4G036290 Cucumis sativus L. HOM05D000372 ORTHO05D003436 6.8e-08 60.8 53 47.2
Prupe.1G400900 Prunus persica HOM05D000372 ORTHO05D003436 8.9e-08 60.5 56 48.2
AT5G10680 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 1.2e-07 60.1 36 80.6
Cfa017850 Carpinus fangiana HOM05D000372 ORTHO05D003436 1.2e-07 60.1 53 47.2
MELO3C016937.2 Cucumis melo HOM05D000372 ORTHO05D003436 1.2e-07 60.1 53 47.2
Sabra06G0210300 Salix brachista HOM05D000372 ORTHO05D003436 1.2e-07 60.1 53 49.1
Haze_18342 Corylus avellana HOM05D000372 ORTHO05D003436 1.5e-07 59.7 53 47.2
Potri.006G270500 Populus trichocarpa HOM05D000372 ORTHO05D003436 1.5e-07 59.7 53 47.2
MD08G1047400 Malus domestica HOM05D000372 ORTHO05D003436 2.0e-07 59.3 56 46.4
Sabra18G0012300 Salix brachista HOM05D000372 ORTHO05D003436 2.0e-07 59.3 54 48.1
ClCG05G016010 Citrullus lanatus HOM05D000372 ORTHO05D003436 3.4e-07 58.5 53 47.2
Duzib150G0268 Durio zibethinus HOM05D000372 ORTHO05D003436 3.4e-07 58.5 53 45.3
Nn8g40299 Nelumbo nucifera HOM05D000372 ORTHO05D003436 3.4e-07 58.5 54 44.4
CiPaw.16G070900 Carya illinoinensis HOM05D000372 ORTHO05D003436 5.8e-07 57.8 53 45.3
Thecc.09G009700 Theobroma cacao HOM05D000372 ORTHO05D003436 5.8e-07 57.8 53 47.2
TWI32G0796 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 5.8e-07 57.8 52 46.2
Duzib168G1416 Durio zibethinus HOM05D000372 ORTHO05D003436 7.5e-07 57.4 53 49.1
Sed0000787 Sechium edule HOM05D000372 ORTHO05D003436 7.5e-07 57.4 53 47.2
TWI63G0489 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 7.5e-07 57.4 71 40.8
Eucgr.C04019 Eucalyptus grandis HOM05D000372 ORTHO05D003436 9.8e-07 57.0 53 43.4
Gohir.D05G065500 Gossypium hirsutum HOM05D000372 ORTHO05D003436 9.8e-07 57.0 54 44.4
Gorai.009G066300 Gossypium raimondii HOM05D000372 ORTHO05D003436 9.8e-07 57.0 54 44.4
QL02p017417 Quercus lobata HOM05D000372 ORTHO05D003436 9.8e-07 57.0 53 43.4
MBI14_g24282_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D003436 1.3e-06 56.6 53 49.1
PGR044G0422 Punica granatum HOM05D000372 ORTHO05D003436 1.3e-06 56.6 53 41.5
Aqoxy7G03181 Aquilegia oxysepala HOM05D000372 ORTHO05D003436 1.7e-06 56.2 54 42.6
Gohir.A05G063000 Gossypium hirsutum HOM05D000372 ORTHO05D003436 2.2e-06 55.8 54 44.4
HanXRQChr06g0174111 Helianthus annuus HOM05D000372 ORTHO05D003436 2.2e-06 55.8 53 49.1
CANSAT25G2139 Cannabis sativa HOM05D000372 ORTHO05D003436 3.7e-06 55.1 70 40.0
Cpa.g.sc23.44 Carica papaya HOM05D000372 ORTHO05D003436 3.7e-06 55.1 53 43.4
Lsat_1_v5_gn_3_25440 Lactuca sativa HOM05D000372 ORTHO05D003436 3.7e-06 55.1 52 48.1
Gohir.A05G062700 Gossypium hirsutum HOM05D000372 ORTHO05D003436 4.9e-06 54.7 53 45.3
Sc23g0007090 Simmondsia chinensis HOM05D000372 ORTHO05D003436 4.9e-06 54.7 54 50.0
arahy.Tifrunner.gnm1.ann1.54Q5ZL Arachis hypogaea HOM05D000372 ORTHO05D003436 8.3e-06 53.9 53 49.1
arahy.Tifrunner.gnm1.ann1.672M4G Arachis hypogaea HOM05D000372 ORTHO05D003436 8.3e-06 53.9 53 49.1
Gohir.D05G065200 Gossypium hirsutum HOM05D000372 ORTHO05D003436 8.3e-06 53.9 53 45.3
Gorai.009G066000 Gossypium raimondii HOM05D000372 ORTHO05D003436 8.3e-06 53.9 53 45.3


User provided reference genes

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