Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.9e-30 135.2 175 100.0
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.9e-30 135.2 175 100.0
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.9e-14 82.8 48 89.6
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 4.9e-14 82.0 48 89.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 8.4e-14 81.3 48 87.5
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.1e-13 80.9 48 87.5
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.2e-13 79.3 48 85.4
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 3.2e-13 79.3 48 85.4
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 3.2e-13 79.3 48 85.4
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.2e-13 79.3 46 91.3
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 4.1e-13 79.0 48 83.3
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 5.4e-13 78.6 48 85.4
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 5.4e-13 78.6 48 85.4
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.1e-12 76.6 48 83.3
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.1e-12 76.6 48 83.3
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 2.7e-12 76.3 48 83.3
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 2.7e-12 76.3 48 83.3
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 2.7e-12 76.3 48 83.3
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.3e-11 73.2 48 79.2
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 5.1e-11 72.0 48 77.1
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 6.6e-11 71.6 48 77.1
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.1e-10 70.9 48 77.1
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.3e-10 68.9 45 75.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 4.3e-10 68.9 45 75.6
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.8e-09 66.2 45 71.1
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 3.1e-08 62.8 46 67.4
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.2e-08 62.0 48 64.6
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 6.8e-08 61.6 48 64.6
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 6.8e-08 61.6 48 64.6
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 6.8e-08 61.6 46 67.4
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 6.8e-08 61.6 45 68.9
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 8.9e-08 61.2 46 67.4
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 8.9e-08 61.2 46 65.2
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-07 60.8 46 60.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.5e-07 60.5 48 62.5
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.5e-07 60.5 48 62.5
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.5e-07 60.5 48 62.5
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.5e-07 60.5 46 60.9
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.6e-07 59.7 46 60.9
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 3.4e-07 59.3 46 63.0
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.4e-07 58.9 50 70.0
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 4.4e-07 58.9 46 60.9
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.4e-07 58.9 46 60.9
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 7.6e-07 58.2 46 63.0
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 7.6e-07 58.2 46 63.0
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.6e-07 58.2 46 60.9
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-06 57.4 42 59.5
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-06 57.4 42 59.5
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.3e-06 57.4 40 62.5
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.2e-06 56.6 46 60.9
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.2e-06 56.6 46 58.7
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 2.2e-06 56.6 46 60.9
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.9e-06 56.2 46 58.7
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.9e-06 56.2 46 63.0
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 2.9e-06 56.2 46 56.5
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 3.8e-06 55.8 46 63.0
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 3.8e-06 55.8 46 60.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 3.8e-06 55.8 46 60.9
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 3.8e-06 55.8 46 60.9
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 4.9e-06 55.5 46 56.5
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 4.9e-06 55.5 46 60.9
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 6.4e-06 55.1 46 60.9
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 6.4e-06 55.1 46 60.9
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.4e-06 55.1 46 54.3
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 6.4e-06 55.1 46 56.5
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 6.4e-06 55.1 45 53.3
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 6.4e-06 55.1 45 53.3
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 8.4e-06 54.7 46 58.7
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 8.4e-06 54.7 46 58.7
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 8.4e-06 54.7 45 53.3


User provided reference genes

Program Settings