Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 3.8e-134 481.5 242 100.0
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 1.6e-127 459.5 242 95.9
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 8.6e-126 453.8 242 93.8
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 3.4e-122 441.8 242 90.9
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 8.6e-110 400.6 248 82.7
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 8.6e-110 400.6 250 80.8
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 2.1e-108 396.0 249 80.7
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 6.8e-107 391.0 251 79.7
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 5.4e-104 381.3 259 77.2
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 7.1e-104 380.9 261 77.0
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 7.1e-104 380.9 261 77.0
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 8.6e-102 374.0 251 75.3
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 1.2e-92 343.6 275 68.4
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 2.9e-89 332.4 238 74.4
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 5.4e-88 328.2 246 67.9
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 9.3e-88 327.4 249 66.3
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 2.1e-87 326.2 252 67.9
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 4.6e-87 325.1 240 67.9
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 6.0e-87 324.7 249 66.7
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 1.0e-86 323.9 239 67.8
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.3e-86 322.8 250 65.6
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 6.6e-86 321.2 242 65.7
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 1.1e-85 320.5 227 70.0
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 1.9e-85 319.7 251 65.3
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 2.5e-85 319.3 249 64.7
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 3.3e-85 318.9 245 66.1
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 5.6e-85 318.2 252 65.9
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 2.1e-84 316.2 250 65.6
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 2.8e-84 315.8 252 64.7
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 1.8e-83 313.2 244 66.0
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 5.3e-83 311.6 253 64.8
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 9.0e-83 310.8 217 70.0
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 2.0e-82 309.7 246 63.0
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 2.0e-82 309.7 251 64.5
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 4.4e-82 308.5 252 65.1
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 4.4e-82 308.5 252 63.1
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 7.6e-82 307.8 254 62.2
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 7.6e-82 307.8 246 62.6
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 7.6e-82 307.8 257 63.8
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 2.2e-81 306.2 252 63.5
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.9e-81 305.8 249 62.2
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.8e-81 305.4 251 61.8
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 1.9e-80 303.1 271 60.5
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 5.4e-80 301.6 231 64.5
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 9.3e-80 300.8 252 62.7
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.6e-79 300.1 249 59.4
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 4.6e-79 298.5 243 63.0
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 4.6e-79 298.5 243 63.0
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 4.6e-79 298.5 252 60.3
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 1.0e-78 297.4 240 62.9
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.3e-78 297.0 267 59.2
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 1.3e-78 297.0 235 66.4
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 1.7e-78 296.6 251 59.4
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 1.7e-78 296.6 252 62.3
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 5.1e-78 295.0 239 61.9
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 5.1e-78 295.0 233 65.2
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 6.6e-78 294.7 253 58.5
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 6.6e-78 294.7 229 64.2
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 1.1e-77 293.9 213 68.1
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 3.3e-77 292.4 236 64.0
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 3.3e-77 292.4 240 63.3
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 7.3e-77 291.2 236 63.6
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 7.3e-77 291.2 233 65.2
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 7.3e-77 291.2 240 62.5
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 9.6e-77 290.8 262 58.8
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 2.4e-75 286.2 236 62.7
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 3.1e-75 285.8 254 58.3
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.1e-75 285.8 292 53.8
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 1.5e-74 283.5 246 62.2
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 4.5e-74 282.0 234 61.5
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 7.6e-74 281.2 252 59.1
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 4.9e-73 278.5 256 57.4
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 4.9e-73 278.5 184 72.3
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 1.1e-72 277.3 249 59.8
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 1.1e-72 277.3 232 59.9
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 1.1e-72 277.3 211 64.9
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.4e-72 276.9 254 58.3
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 3.2e-72 275.8 248 57.3
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 7.1e-72 274.6 239 60.3
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 1.2e-71 273.9 244 59.0
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 1.9e-69 266.5 249 55.8
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 3.3e-69 265.8 252 55.6
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 3.3e-69 265.8 253 54.2
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 5.6e-69 265.0 252 55.6
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 1.6e-68 263.5 243 56.8
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 2.1e-68 263.1 162 74.1
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.4e-67 259.6 213 61.5
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 3.1e-67 259.2 245 55.5
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 9.0e-67 257.7 250 53.6
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 3.4e-66 255.8 230 56.1
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 3.4e-66 255.8 246 54.5
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 2.2e-65 253.1 246 54.1
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 6.5e-65 251.5 247 53.0
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 1.4e-64 250.4 244 55.7
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 2.7e-63 246.1 207 60.9
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 1.0e-62 244.2 213 54.9
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 2.3e-62 243.0 210 57.6
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 1.9e-61 240.0 218 55.0
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 5.7e-61 238.4 254 52.4
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 4.8e-60 235.3 222 54.5
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 1.2e-58 230.7 144 80.6
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 1.5e-58 230.3 144 77.1
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 3.2e-56 222.6 205 59.5
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 3.8e-49 199.1 182 58.8
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.6e-47 193.7 240 48.3
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 7.9e-47 191.4 220 45.5
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 3.7e-44 182.6 164 58.5
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 1.2e-42 177.6 157 54.8
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 2.6e-42 176.4 134 61.9
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 2.9e-41 172.9 177 46.3
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 7.9e-39 164.9 187 42.2
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 6.7e-38 161.8 148 60.8
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 4.1e-35 152.5 167 44.9
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 7.0e-35 151.8 137 57.7
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 1.3e-33 147.5 152 56.6
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 1.1e-32 144.4 95 69.5
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 8.0e-23 111.7 96 56.2
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 1.8e-22 110.5 68 75.0
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-14 83.6 183 28.4
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 3.0e-14 83.2 132 33.3
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 3.1e-11 73.2 142 30.3
PRCOL_00002748 Prasinoderma coloniale HOM05D006710 ORTHO05D008353 1.0e-09 68.2 158 31.6
Dinv22904 Davidia involucrata HOM05D006710 ORTHO05D008353 8.0e-07 58.5 62 48.4


User provided reference genes

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