Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.4e-207 726.1 379 100.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.5e-198 694.9 379 95.8
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.1e-196 689.9 379 94.5
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.3e-186 655.6 379 88.9
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.2e-182 643.3 382 88.2
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 3.5e-182 641.7 381 87.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.3e-181 639.8 383 86.9
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 7.2e-180 634.0 383 87.2
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.8e-179 632.1 382 86.1
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.0e-178 630.2 384 86.7
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.2e-177 626.7 382 84.8
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.0e-177 625.9 383 85.9
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.0e-177 625.9 383 85.9
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.5e-177 624.0 382 84.3
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 3.7e-176 621.7 382 84.6
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 9.2e-175 617.1 382 83.5
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.9e-168 595.5 386 81.6
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 4.3e-164 581.6 382 80.9
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.5e-156 555.8 385 77.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 8.9e-146 520.8 385 72.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.9e-143 513.1 382 70.7
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.7e-141 506.5 385 69.9
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.9e-141 505.4 385 69.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 3.9e-141 505.4 385 70.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.5e-140 502.7 383 71.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 5.6e-140 501.5 385 68.8
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 7.3e-140 501.1 385 69.1
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.2e-139 500.4 385 69.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.2e-139 500.4 385 69.6
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.4e-138 496.9 385 68.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.4e-138 496.9 385 68.8
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.8e-138 496.5 385 69.4
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.4e-138 496.1 385 69.1
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.4e-138 496.1 385 69.1
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 2.4e-138 496.1 385 69.6
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.4e-138 496.1 385 68.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.4e-138 496.1 385 68.8
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 5.2e-138 495.0 382 69.1
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.2e-137 493.8 385 68.8
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 2.0e-137 493.0 385 68.3
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-137 492.7 385 68.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.4e-137 492.3 385 67.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.4e-137 492.3 385 67.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 4.4e-137 491.9 385 69.4
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 4.4e-137 491.9 385 67.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 5.8e-137 491.5 385 69.1
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 5.8e-137 491.5 383 68.1
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.3e-136 490.3 382 68.6
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.8e-136 488.8 385 68.6
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 3.8e-136 488.8 385 68.3
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.8e-136 488.8 386 67.6
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 4.9e-136 488.4 385 69.4
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 4.9e-136 488.4 385 68.3
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 6.4e-136 488.0 385 68.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 6.4e-136 488.0 384 68.0
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 6.4e-136 488.0 389 67.9
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 8.4e-136 487.6 378 69.3
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.4e-135 486.1 385 68.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 7.1e-135 484.6 385 67.5
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.1e-134 483.0 385 66.5
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 4.6e-134 481.9 385 67.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.7e-133 479.9 385 66.8
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.3e-133 479.6 385 66.8
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.3e-133 479.6 385 66.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 5.1e-133 478.4 385 66.8
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 6.6e-133 478.0 403 65.5
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.9e-132 476.5 385 67.0
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.3e-132 475.7 386 66.6
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.3e-132 475.3 386 66.8
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 5.6e-132 474.9 385 66.5
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 7.3e-132 474.6 382 66.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 9.6e-132 474.2 385 66.5
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.8e-131 472.6 383 67.1
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.8e-131 471.9 389 64.5
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.2e-131 471.5 385 66.0
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.8e-130 469.9 385 65.2
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 3.1e-130 469.2 386 66.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.3e-130 468.4 382 67.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.2e-129 467.2 385 64.9
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.0e-129 466.5 386 65.8
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.6e-129 466.1 382 67.0
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.3e-128 463.8 386 64.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.7e-128 463.4 385 65.5
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.2e-128 463.0 387 64.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.9e-128 462.6 382 64.1
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.9e-128 462.6 382 64.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.8e-128 462.2 385 64.7
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.8e-128 462.2 385 64.7
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-127 460.7 410 63.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.4e-127 460.3 386 64.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.2e-127 459.1 385 64.4
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 9.3e-127 457.6 385 64.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.2e-126 457.2 383 63.4
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.1e-126 456.4 350 69.4
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.5e-126 455.7 398 62.8
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.0e-125 454.1 385 62.9
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.1e-125 451.8 414 61.8
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.7e-125 451.4 414 62.1
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.7e-125 451.1 385 64.4
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 8.7e-125 451.1 385 62.6
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.3e-124 448.7 414 61.8
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 9.6e-124 447.6 349 67.6
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.3e-123 447.2 414 61.6
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.8e-123 446.0 385 65.2
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 8.1e-123 444.5 386 61.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 3.4e-121 439.1 349 67.9
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.2e-120 436.4 350 67.7
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.1e-119 434.1 385 61.3
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.1e-116 424.1 385 59.2
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.1e-114 416.0 391 58.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 3.1e-114 416.0 390 57.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-111 407.5 386 60.4
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 3.2e-111 406.0 333 64.6
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.3e-111 404.4 342 64.0
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 2.1e-110 403.3 379 57.5
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-108 397.1 397 56.2
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 2.5e-108 396.4 390 54.6
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.3e-108 396.0 380 58.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.0e-104 384.4 399 56.1
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.7e-104 383.6 394 55.6
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.2e-103 379.0 383 55.9
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.0e-101 374.4 380 57.6
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 5.5e-95 352.1 294 60.9
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 9.7e-92 341.3 416 48.8
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 4.1e-90 335.9 275 66.2
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 6.3e-83 312.0 435 42.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.0e-82 308.5 369 47.2
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 9.1e-74 281.6 388 43.0
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.5e-73 279.6 267 58.1
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.5e-71 272.3 228 64.0
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 3.6e-70 269.6 301 55.1
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 1.6e-57 227.6 464 35.6
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 9.8e-52 208.4 238 47.9
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 4.7e-46 189.5 164 62.2
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-43 180.6 142 68.3
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.0e-40 170.2 146 65.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 7.5e-36 155.6 387 31.8
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.1e-33 147.5 172 55.2
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 5.6e-31 139.4 123 64.2
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.6e-28 130.6 167 46.1
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.9e-27 127.1 213 38.0
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.6e-25 121.3 108 60.2
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 6.0e-25 119.4 150 48.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 9.6e-23 112.1 156 46.8
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 2.1e-22 110.9 84 67.9
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-21 107.8 137 50.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.4e-20 103.2 121 51.2
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.2e-19 100.9 74 66.2
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 6.0e-17 92.8 70 62.9
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.7e-16 89.0 128 46.9
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 2.5e-15 87.4 128 46.9
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 5.6e-15 86.3 82 52.4
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-13 80.9 100 47.0
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.5e-12 78.2 107 47.7
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 2.0e-12 77.8 125 42.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.6e-12 77.4 45 86.7
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 4.5e-12 76.6 89 42.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 5.8e-12 76.3 88 52.3
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 6.4e-11 72.8 42 88.1
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.9e-10 71.2 47 68.1
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.7e-08 62.8 101 44.6
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.9e-07 61.2 36 80.6
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.9e-07 61.2 38 81.6
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.3e-06 58.5 38 76.3


User provided reference genes

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