Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 1.8e-19 100.1 59 100.0
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 5.1e-19 98.6 59 91.5
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 2.5e-18 96.3 59 89.8
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 4.3e-18 95.5 59 88.1
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 4.3e-18 95.5 59 88.1
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 4.3e-18 95.5 59 88.1
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 4.3e-18 95.5 59 88.1
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 5.7e-18 95.1 59 88.1
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 7.4e-18 94.7 59 86.4
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 9.6e-18 94.4 59 86.4
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 8.2e-17 91.3 59 84.7
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 8.2e-17 91.3 59 84.7
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 1.1e-16 90.9 59 83.1
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 2.4e-16 89.7 59 83.1
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 3.1e-16 89.4 59 81.4
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.1e-16 89.4 59 81.4
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.1e-16 89.4 59 81.4
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.1e-16 89.4 59 83.1
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 3.1e-16 89.4 59 83.1
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 3.1e-16 89.4 59 81.4
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 5.3e-16 88.6 59 81.4
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 5.3e-16 88.6 59 79.7
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 6.9e-16 88.2 59 81.4
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 6.9e-16 88.2 59 81.4
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 6.9e-16 88.2 59 79.7
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 6.9e-16 88.2 59 79.7
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 6.9e-16 88.2 59 79.7
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 9.0e-16 87.8 59 79.7
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 9.0e-16 87.8 59 81.4
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.2e-15 87.4 59 81.4
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 1.2e-15 87.4 59 79.7
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 1.5e-15 87.0 59 79.7
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 1.5e-15 87.0 59 81.4
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 2.0e-15 86.7 59 79.7
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 2.0e-15 86.7 59 79.7
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 2.6e-15 86.3 59 78.0
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 2.6e-15 86.3 59 79.7
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 2.6e-15 86.3 58 81.0
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 2.6e-15 86.3 59 78.0
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.6e-15 86.3 59 78.0
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 2.6e-15 86.3 59 79.7
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 4.5e-15 85.5 59 78.0
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 4.5e-15 85.5 59 76.3
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 4.5e-15 85.5 59 78.0
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 5.8e-15 85.1 59 78.0
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 5.8e-15 85.1 59 78.0
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 7.6e-15 84.7 59 78.0
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 7.6e-15 84.7 59 78.0
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 78.0
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 72.9
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 72.9
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 78.0
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 78.0
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 78.0
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 78.0
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 1.3e-14 84.0 59 76.3
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 1.3e-14 84.0 59 76.3
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 1.7e-14 83.6 59 76.3
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 2.2e-14 83.2 59 76.3
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 2.2e-14 83.2 59 74.6
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 2.9e-14 82.8 59 74.6
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 3.8e-14 82.4 59 76.3
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 3.8e-14 82.4 59 72.9
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 5.0e-14 82.0 59 72.9
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 5.0e-14 82.0 59 74.6
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 5.0e-14 82.0 59 71.2
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 5.0e-14 82.0 59 74.6
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 6.5e-14 81.6 58 75.9
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 6.5e-14 81.6 59 72.9
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 6.5e-14 81.6 58 74.1
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 6.5e-14 81.6 59 74.6
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 8.4e-14 81.3 59 74.6
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 1.1e-13 80.9 59 72.9
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 1.9e-13 80.1 58 72.4
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.9e-13 80.1 58 74.1
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.9e-13 80.1 59 71.2
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 1.9e-13 80.1 59 72.9
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 2.5e-13 79.7 59 71.2
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 5.5e-13 78.6 61 68.9
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 7.2e-13 78.2 62 72.6
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 2.1e-12 76.6 54 75.9
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 1.0e-11 74.3 59 67.8
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 1.8e-11 73.6 64 68.8
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 5.1e-11 72.0 54 72.2
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 8.7e-11 71.2 52 73.1
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 1.9e-10 70.1 59 64.4
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 1.9e-10 70.1 78 56.4
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 9.7e-10 67.8 51 70.6
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 1.3e-09 67.4 49 71.4
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 1.3e-09 67.4 46 78.3
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 2.2e-09 66.6 51 68.6
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 5.3e-08 62.0 52 65.4
COL.COLO4_10551 Corchorus olitorius HOM05D007682 ORTHO05D009690 1.3e-06 57.4 33 90.9
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 6.5e-06 55.1 54 61.1


User provided reference genes

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