Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G39070 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 1.6e-67 259.2 125 100.0
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 1.3e-16 90.1 53 84.9
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 3.7e-16 88.6 53 83.0
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 1.4e-15 86.7 53 83.0
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 3.2e-15 85.5 53 81.1
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 3.2e-15 85.5 53 81.1
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 3.2e-15 85.5 53 81.1
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 7.0e-15 84.3 53 79.2
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 7.0e-15 84.3 53 81.1
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 7.0e-15 84.3 53 81.1
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 9.2e-15 84.0 53 79.2
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 2.1e-14 82.8 60 68.3
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 3.5e-14 82.0 60 65.0
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 3.5e-14 82.0 60 65.0
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 6.0e-14 81.3 53 77.4
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 7.8e-14 80.9 53 77.4
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 7.8e-14 80.9 60 68.3
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 7.8e-14 80.9 60 63.3
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 7.8e-14 80.9 60 63.3
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 1.3e-13 80.1 65 61.5
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 1.3e-13 80.1 60 61.7
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 1.3e-13 80.1 60 63.3
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 2.3e-13 79.3 60 65.0
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 2.3e-13 79.3 60 63.3
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 2.3e-13 79.3 59 64.4
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 2.3e-13 79.3 60 63.3
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 2.3e-13 79.3 53 75.5
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 3.0e-13 79.0 60 63.3
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 3.0e-13 79.0 63 60.3
GSVIVG01005848001 Vitis vinifera HOM05D001548 ORTHO05D003922 3.0e-13 79.0 60 65.0
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 3.9e-13 78.6 60 61.7
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 3.9e-13 78.6 61 63.9
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 3.9e-13 78.6 61 63.9
Medtr4g050710 Medicago truncatula HOM05D001548 ORTHO05D003922 3.9e-13 78.6 61 63.9
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 3.9e-13 78.6 61 63.9
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 5.1e-13 78.2 60 63.3
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 5.1e-13 78.2 53 67.9
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 5.1e-13 78.2 59 66.1
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 5.1e-13 78.2 53 67.9
Atru.chr10.1989 Acer truncatum HOM05D001548 ORTHO05D003922 6.6e-13 77.8 53 67.9
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 6.6e-13 77.8 60 63.3
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 6.6e-13 77.8 60 63.3
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 6.6e-13 77.8 60 63.3
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 8.6e-13 77.4 60 66.7
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 8.6e-13 77.4 60 65.0
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 8.6e-13 77.4 60 63.3
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.1e-12 77.0 81 54.3
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.1e-12 77.0 81 54.3
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.1e-12 77.0 81 54.3
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 1.1e-12 77.0 60 63.3
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 1.1e-12 77.0 60 63.3
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 1.1e-12 77.0 60 65.0
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 1.1e-12 77.0 60 65.0
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 1.5e-12 76.6 60 61.7
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 1.5e-12 76.6 60 61.7
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 1.9e-12 76.3 60 66.7
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.9e-12 76.3 53 67.9
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 1.9e-12 76.3 60 61.7
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 1.9e-12 76.3 60 61.7
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 2.5e-12 75.9 65 58.5
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 2.5e-12 75.9 60 65.0
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 2.5e-12 75.9 60 61.7
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 3.3e-12 75.5 60 61.7
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 3.3e-12 75.5 60 61.7
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 3.3e-12 75.5 60 63.3
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 3.3e-12 75.5 60 61.7
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 3.3e-12 75.5 60 60.0
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 3.3e-12 75.5 60 58.3
Zm00001eb178860 Zea mays HOM05D008270 ORTHO05D010684 3.3e-12 75.5 59 64.4
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 4.3e-12 75.1 60 60.0
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 4.3e-12 75.1 60 61.7
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 4.3e-12 75.1 60 61.7
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 4.3e-12 75.1 60 60.0
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 4.3e-12 75.1 59 61.0
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 4.3e-12 75.1 60 61.7
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 4.3e-12 75.1 53 67.9
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 4.3e-12 75.1 60 58.3
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 5.6e-12 74.7 60 63.3
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 5.6e-12 74.7 78 51.3
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 5.6e-12 74.7 60 63.3
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 5.6e-12 74.7 60 61.7
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 5.6e-12 74.7 60 65.0
TWI63G1036 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 5.6e-12 74.7 53 67.9
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 7.3e-12 74.3 62 58.1
Lj1A1211G82 Lonicera japonica HOM05D001548 ORTHO05D003922 7.3e-12 74.3 53 64.2
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 7.3e-12 74.3 60 58.3
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 7.3e-12 74.3 60 61.7
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 7.3e-12 74.3 81 50.6
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 7.3e-12 74.3 59 62.7
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 9.5e-12 73.9 60 61.7
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 9.5e-12 73.9 59 61.0
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 9.5e-12 73.9 59 61.0
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 9.5e-12 73.9 59 61.0
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 9.5e-12 73.9 60 56.7
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 1.2e-11 73.6 81 50.6
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 1.2e-11 73.6 61 60.7
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 1.2e-11 73.6 61 59.0
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 1.2e-11 73.6 60 61.7
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 1.2e-11 73.6 60 56.7
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 1.6e-11 73.2 56 64.3
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 1.6e-11 73.2 61 59.0
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 1.6e-11 73.2 53 64.2
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 1.6e-11 73.2 60 60.0
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 2.1e-11 72.8 60 58.3
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 2.1e-11 72.8 60 60.0
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 2.1e-11 72.8 60 58.3
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 2.1e-11 72.8 78 50.0
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 2.1e-11 72.8 60 61.7
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 2.8e-11 72.4 61 59.0
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.8e-11 72.4 60 58.3
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 2.8e-11 72.4 60 58.3
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 2.8e-11 72.4 60 61.7
CAN.G1649.4 Capsicum annuum HOM05D001548 ORTHO05D003922 3.6e-11 72.0 61 60.7
Cpa.g.sc27.108 Carica papaya HOM05D001548 ORTHO05D003922 3.6e-11 72.0 60 60.0
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 3.6e-11 72.0 60 60.0
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 3.6e-11 72.0 60 63.3
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 4.7e-11 71.6 60 58.3
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 6.2e-11 71.2 60 60.0
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 6.2e-11 71.2 60 60.0
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 6.2e-11 71.2 60 60.0
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 6.2e-11 71.2 60 53.3
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 8.1e-11 70.9 60 60.0
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 8.1e-11 70.9 60 60.0
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 8.1e-11 70.9 60 58.3
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 8.1e-11 70.9 60 58.3
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 8.1e-11 70.9 60 56.7
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 1.1e-10 70.5 60 58.3
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 1.1e-10 70.5 60 60.0
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 1.4e-10 70.1 59 59.3
RcHm_v2.0_Chr2g0162661 Rosa chinensis HOM05D001548 ORTHO05D003922 1.4e-10 70.1 53 62.3
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 1.4e-10 70.1 60 56.7
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 1.4e-10 70.1 60 56.7
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.3e-10 69.3 60 58.3
Zm00001eb307530 Zea mays HOM05D001548 ORTHO05D003922 2.3e-10 69.3 59 57.6
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 3.1e-10 68.9 81 45.7
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 5.2e-10 68.2 60 55.0
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 6.8e-10 67.8 60 56.7
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 6.8e-10 67.8 55 61.8
SEGI_27377 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 6.8e-10 67.8 60 51.7
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 1.2e-09 67.0 60 56.7
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 1.2e-09 67.0 60 58.3
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 1.5e-09 66.6 60 56.7
Zm00001eb191990 Zea mays HOM05D001548 ORTHO05D003922 2.0e-09 66.2 91 42.9
SEGI_40386 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 2.6e-09 65.9 60 51.7
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 4.4e-09 65.1 60 55.0
CDE11G1200 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 5.8e-09 64.7 60 51.7
RcHm_v2.0_Chr5g0030371 Rosa chinensis HOM05D001548 ORTHO05D003922 7.5e-09 64.3 59 52.5
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.7e-08 63.2 60 50.0
RcHm_v2.0_Chr5g0030471 Rosa chinensis HOM05D001548 ORTHO05D003922 2.2e-08 62.8 59 50.8
CDE05G1551 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 2.9e-08 62.4 60 50.0
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 3.7e-08 62.0 60 50.0
RcHm_v2.0_Chr5g0030211 Rosa chinensis HOM05D001548 ORTHO05D003922 4.9e-08 61.6 59 50.8
RcHm_v2.0_Chr5g0030281 Rosa chinensis HOM05D001548 ORTHO05D003922 8.3e-08 60.8 53 52.8
Mapoly0005s0036 Marchantia polymorpha HOM05D001548 ORTHO05D003922 1.4e-07 60.1 78 41.0
SMO367G0057 Selaginella moellendorffii HOM05D001548 ORTHO05D003922 4.1e-07 58.5 53 54.7
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 1.2e-06 57.0 60 48.3
FvH4_3g18080 Fragaria vesca HOM05D001548 ORTHO05D003922 4.6e-06 55.1 62 45.2
FAN16G2449 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.6e-06 55.1 62 45.2


User provided reference genes

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