Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1696.4 862 100.0
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1362.1 868 82.3
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1344.7 878 79.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 0.0e+00 1334.7 878 79.0
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 0.0e+00 1331.6 879 78.2
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 0.0e+00 1310.0 876 78.4
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 0.0e+00 1294.6 873 76.3
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 0.0e+00 1243.0 898 73.5
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 0.0e+00 1241.9 879 73.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1239.6 879 73.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 0.0e+00 1231.1 877 72.6
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1227.2 877 72.5
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1226.1 880 73.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1225.7 877 72.3
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1132.5 882 71.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.9e-300 1035.8 870 62.6
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.7e-259 899.0 897 60.0
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.2e-249 867.1 559 81.4
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.6e-238 828.6 880 52.2
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.7e-229 800.0 879 49.5
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.5e-228 797.0 886 50.2
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.2e-227 793.9 876 50.0
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.6e-225 786.2 879 49.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.2e-224 783.1 876 49.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 4.9e-224 781.9 876 49.1
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 7.1e-223 778.1 884 49.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.3e-221 773.9 883 49.4
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.3e-221 773.9 877 49.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-221 773.5 884 49.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.3e-220 768.8 877 49.1
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-218 761.9 883 48.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.4e-215 751.9 874 48.5
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.3e-213 747.3 882 47.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.6e-213 744.6 892 47.0
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-212 744.2 882 47.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-212 744.2 882 47.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.1e-210 736.1 849 49.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.2e-209 734.2 881 47.7
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 3.4e-209 732.6 882 46.7
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 9.9e-209 731.1 925 45.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.7e-208 730.3 876 47.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 8.4e-208 728.0 876 47.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.1e-204 717.6 884 46.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.5e-204 716.5 885 45.3
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.3e-204 716.1 741 52.6
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 9.6e-204 714.5 882 46.5
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 9.6e-204 714.5 889 46.8
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.6e-203 713.8 891 44.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 3.6e-203 712.6 914 45.5
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.2e-201 707.6 873 46.5
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.5e-201 707.2 883 45.9
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 9.9e-201 704.5 830 47.2
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.3e-200 704.1 879 47.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.8e-200 702.6 898 46.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.9e-199 700.3 882 45.4
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.4e-199 699.9 882 45.1
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.6e-198 697.2 886 45.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 6.0e-198 695.3 881 44.8
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.3e-197 694.1 887 44.5
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 8.7e-197 691.4 890 44.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.5e-196 690.6 885 44.6
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 9.6e-196 688.0 932 44.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 9.6e-196 688.0 885 44.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.8e-194 683.7 750 50.8
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.4e-192 675.2 887 43.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 5.5e-191 672.2 881 44.2
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.1e-190 670.2 858 45.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 6.0e-190 668.7 877 43.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.8e-189 667.2 846 46.1
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.8e-189 667.2 878 44.1
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.5e-188 664.1 873 44.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.1e-187 660.2 881 43.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 8.2e-187 658.3 881 43.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 9.0e-186 654.8 877 42.8
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 3.4e-185 652.9 942 41.5
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 4.2e-183 646.0 885 41.5
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.8e-181 640.6 887 41.0
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.2e-177 627.9 895 40.8
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.0e-177 627.1 877 40.9
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 8.5e-176 621.7 888 40.2
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.2e-175 619.8 882 42.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.7e-174 616.7 868 43.1
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 5.1e-173 612.5 943 39.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 8.7e-173 611.7 729 47.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.2e-167 592.8 881 39.3
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 9.4e-167 591.7 880 41.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.6e-166 589.7 855 41.3
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 9.7e-164 581.6 735 44.2
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-162 577.8 880 40.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.7e-161 572.0 905 37.6
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 3.8e-160 569.7 696 45.7
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 8.5e-160 568.5 641 48.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.5e-156 557.8 695 45.0
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.7e-156 555.8 826 40.1
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 6.3e-155 552.4 883 38.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-154 551.2 923 36.8
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 6.5e-152 542.3 835 38.9
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.7e-150 537.0 885 38.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 4.7e-150 536.2 871 39.3
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.8e-149 534.3 534 57.5
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-146 524.6 855 38.6
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 4.2e-143 513.1 670 43.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.7e-142 509.6 702 43.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 9.5e-135 485.3 628 42.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 5.7e-132 476.1 868 34.7
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.7e-131 473.4 697 42.0
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.5e-119 434.9 699 37.9
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.3e-119 432.6 668 40.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.8e-117 427.9 742 37.5
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.1e-117 427.2 543 45.7
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 4.6e-113 413.3 634 39.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.5e-111 407.5 878 32.6
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.1e-101 375.6 692 34.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.8e-101 372.9 239 79.9
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 6.9e-93 346.3 786 30.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 3.2e-90 337.4 739 32.5
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.0e-81 306.6 270 58.1
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 5.1e-80 303.5 240 63.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.0e-77 293.9 811 29.1
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.5e-76 290.4 239 63.2
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.0e-72 279.3 740 30.1
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.7e-67 261.9 950 26.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.5e-67 260.0 951 26.0
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.5e-67 260.0 951 26.0
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.5e-65 254.2 594 31.3
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-63 249.2 193 66.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.9e-58 231.9 249 53.0
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 5.5e-58 230.3 193 59.1
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.7e-57 228.0 435 40.7
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.0e-56 226.1 512 30.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.8e-56 225.3 217 54.8
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 8.8e-56 223.0 199 54.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.0e-48 199.5 309 38.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 5.1e-48 197.2 759 26.4
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.3e-46 192.6 338 34.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.4e-45 188.3 258 41.1
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.3e-38 166.0 212 44.3
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-37 162.9 240 41.2
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.8e-37 162.2 164 53.7
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.6e-36 159.1 143 60.1
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 3.5e-36 157.9 265 35.8
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-32 145.6 145 53.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-30 139.4 180 51.7
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.3e-30 137.1 219 40.2
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 8.3e-30 136.7 183 40.4
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.1e-29 134.8 212 38.7
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 8.5e-27 126.7 84 81.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.5e-26 125.2 145 47.6
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.2e-26 124.4 181 35.9
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.5e-26 124.0 190 36.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.8e-22 110.9 98 51.0
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 8.3e-22 110.2 111 60.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.1e-21 109.8 91 52.7
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 7.0e-21 107.1 208 33.2
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 7.7e-20 103.6 88 68.2
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.1e-18 99.8 174 32.2
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.3e-14 86.3 188 29.3
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.3e-14 84.0 100 46.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.7e-11 75.9 189 28.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.3e-08 65.5 110 41.8
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.3e-08 65.5 50 58.0
BcaC07g36816 Brassica carinata HOM05D004248 ORTHO05D004978 3.4e-07 61.6 49 71.4
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 7.5e-07 60.5 63 55.6


User provided reference genes

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