Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G38800 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 4.9e-125 451.1 212 100.0
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.5e-81 306.6 161 90.7
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 4.0e-79 298.5 161 88.2
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 1.2e-78 297.0 186 78.0
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 3.4e-78 295.4 188 77.1
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 4.5e-78 295.0 161 87.0
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 1.3e-77 293.5 157 88.5
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 4.9e-77 291.6 157 87.9
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 6.4e-77 291.2 157 87.9
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 6.4e-77 291.2 157 87.9
Aa31LG6G13250 Aethionema arabicum HOM05D006805 ORTHO05D008656 5.6e-73 278.1 186 72.6
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 7.4e-73 277.7 182 76.4
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 9.6e-73 277.3 186 73.7
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 1.5e-70 270.0 166 79.5
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 2.0e-70 269.6 161 83.2
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 2.4e-63 246.1 192 60.9
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 5.8e-62 241.5 185 63.2
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 1.3e-61 240.4 156 71.2
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 1.3e-61 240.4 187 61.0
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 1.7e-61 240.0 185 62.7
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 2.2e-61 239.6 187 63.1
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 2.9e-61 239.2 158 70.3
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 1.1e-60 237.3 185 62.7
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 4.2e-60 235.3 187 58.8
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 3.5e-59 232.3 185 60.5
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 3.5e-59 232.3 163 67.5
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 4.6e-59 231.9 185 60.5
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 1.0e-58 230.7 187 59.9
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 3.0e-58 229.2 159 68.6
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 6.7e-58 228.0 194 57.7
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 1.1e-57 227.3 187 58.3
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.5e-57 226.9 163 66.3
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 2.5e-57 226.1 191 58.6
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 2.5e-57 226.1 154 65.6
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 5.7e-57 224.9 185 59.5
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 5.7e-57 224.9 156 68.6
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 7.4e-57 224.6 188 58.0
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 2.2e-56 223.0 187 59.4
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 2.8e-56 222.6 156 67.9
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 2.8e-56 222.6 186 56.5
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 4.8e-56 221.9 184 57.6
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 6.3e-56 221.5 191 57.6
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 8.2e-56 221.1 183 57.9
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 1.1e-55 220.7 184 59.8
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 1.1e-55 220.7 186 55.9
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 1.4e-55 220.3 154 64.3
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 1.8e-55 219.9 185 57.8
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 3.1e-55 219.2 183 57.9
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 6.9e-55 218.0 184 57.1
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 6.9e-55 218.0 184 58.2
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 9.0e-55 217.6 188 55.9
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 9.0e-55 217.6 186 55.9
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 9.0e-55 217.6 154 63.6
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 2.0e-54 216.5 158 63.3
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 3.4e-54 215.7 159 66.0
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 4.5e-54 215.3 188 56.4
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 5.9e-54 214.9 184 58.2
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 1.7e-53 213.4 189 55.0
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 1.7e-53 213.4 189 55.0
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 2.9e-53 212.6 190 56.8
TPR.G21535 Trifolium pratense HOM05D006805 ORTHO05D008656 2.9e-53 212.6 156 64.1
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 6.5e-53 211.5 185 55.7
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 1.1e-52 210.7 184 56.0
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 3.2e-52 209.1 155 61.3
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.2e-52 209.1 184 55.4
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 4.2e-52 208.8 184 55.4
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 1.6e-51 206.8 158 63.3
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 1.6e-51 206.8 184 56.5
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 1.0e-50 204.1 164 60.4
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 7.4e-49 198.0 225 47.1
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 1.3e-48 197.2 242 45.9
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 4.8e-48 195.3 183 50.8
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 6.3e-48 194.9 122 77.0
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 6.3e-48 194.9 165 58.2
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 8.2e-48 194.5 186 53.2
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 1.8e-47 193.4 154 58.4
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 2.4e-47 193.0 120 70.8
Ca_22341_v3 Cicer arietinum L. HOM05D006805 ORTHO05D008656 3.1e-47 192.6 184 53.3
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 3.1e-47 192.6 187 52.4
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 4.2e-44 182.2 185 49.7
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 7.2e-44 181.4 184 50.0
MBI16_g23836_MAGBIO Magnolia biondii HOM05D006805 ORTHO05D008656 1.6e-38 163.7 233 42.9
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.7e-37 160.2 111 68.5
Zm00001eb128340 Zea mays HOM05D006805 ORTHO05D008656 4.2e-36 155.6 184 45.7
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 7.2e-36 154.8 139 56.8
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 1.4e-34 150.6 157 49.7
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 4.0e-34 149.1 162 53.1
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 5.7e-33 145.2 187 43.9
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 7.5e-33 144.8 180 43.9
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 8.2e-32 141.4 124 58.9
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 8.2e-32 141.4 200 44.0
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 2.4e-31 139.8 202 39.1
Lj2g0002148 Lotus japonicus HOM05D006805 ORTHO05D008656 4.1e-31 139.0 98 65.3
SMO141G0060 Selaginella moellendorffii HOM05D006805 ORTHO05D008656 1.0e-29 134.4 163 44.2
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 2.9e-29 132.9 153 46.4
Os01g0262700 Oryza sativa ssp. japonica HOM05D006805 ORTHO05D008656 8.3e-24 114.8 102 53.9
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 4.5e-22 109.0 91 59.3
Mapoly0033s0048 Marchantia polymorpha HOM05D006805 ORTHO05D008656 3.2e-20 102.8 161 36.0
EL10As8g23891 Beta vulgaris HOM05D006805 ORTHO05D008656 9.4e-20 101.3 98 52.0
Pp3c9_15730 Physcomitrium patens HOM05D006805 ORTHO05D008656 1.2e-19 100.9 163 38.0
HanXRQChr16g0499431 Helianthus annuus HOM05D006805 ORTHO05D008656 2.0e-17 93.6 87 52.9
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 4.5e-14 82.4 61 63.9
HanXRQChr12g0370281 Helianthus annuus HOM05D006805 ORTHO05D008656 2.3e-13 80.1 77 50.6
BcaB08g36135 Brassica carinata HOM05D001854 ORTHO05D001800 6.6e-13 78.6 49 73.5
Sc03g0003190 Simmondsia chinensis HOM05D006805 ORTHO05D008656 1.4e-07 60.8 42 54.8


User provided reference genes

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