Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.2e-58 229.6 113 100.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.5e-52 207.2 113 92.0
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 7.5e-48 193.7 112 87.5
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.6e-45 186.0 113 84.1
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.0e-45 185.7 113 84.1
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.0e-45 185.7 113 83.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 4.5e-45 184.5 113 82.3
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.7e-44 182.6 113 82.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.2e-44 182.2 113 82.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.2e-44 182.2 113 82.3
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.9e-44 181.8 113 82.3
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 6.5e-44 180.6 113 82.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.5e-43 179.5 114 79.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.9e-43 179.1 113 81.4
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.2e-43 177.9 113 81.4
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 5.5e-43 177.6 113 80.5
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.3e-41 172.2 113 77.0
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.0e-41 171.4 113 77.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 5.2e-41 171.0 113 77.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.5e-40 169.5 113 77.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.0e-40 169.1 113 77.0
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.1e-38 163.3 113 75.2
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.4e-38 161.0 113 74.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.1e-38 160.2 114 69.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.6e-37 159.5 93 84.9
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.5e-37 158.3 114 67.5
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.8e-36 154.8 113 67.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.0e-36 154.5 113 65.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 8.5e-36 153.7 113 68.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.5e-35 152.9 113 67.3
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.9e-35 152.5 119 65.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 2.5e-35 152.1 113 62.8
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 3.2e-35 151.8 113 65.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 4.2e-35 151.4 113 65.5
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 7.2e-35 150.6 113 63.7
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.2e-35 150.6 115 67.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 7.2e-35 150.6 114 66.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.2e-34 149.8 113 65.5
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.1e-34 149.1 113 64.6
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.8e-34 148.7 113 64.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 3.6e-34 148.3 113 62.8
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 4.7e-34 147.9 114 65.8
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 6.1e-34 147.5 113 63.7
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 6.1e-34 147.5 113 63.7
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 6.1e-34 147.5 113 63.7
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 6.1e-34 147.5 114 62.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 8.0e-34 147.1 115 66.1
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.0e-33 146.7 115 66.1
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-33 146.7 114 62.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.4e-33 146.4 114 60.5
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.8e-33 146.0 89 78.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.3e-33 145.6 112 65.2
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.0e-33 145.2 114 64.0
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.0e-33 145.2 114 60.5
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.0e-33 145.2 87 79.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.0e-33 144.8 112 66.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.2e-33 144.4 113 63.7
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.2e-33 144.4 111 64.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.8e-33 144.1 113 60.2
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-32 143.3 114 63.2
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 114 64.0
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.5e-32 142.9 113 64.6
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.0e-32 142.5 117 60.7
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.6e-32 142.1 113 61.1
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.6e-32 142.1 113 60.2
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.6e-32 142.1 113 61.1
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.4e-32 141.7 117 63.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.4e-32 141.7 112 62.5
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 4.4e-32 141.4 112 62.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.7e-32 141.0 93 73.1
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.7e-32 141.0 93 74.2
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 7.5e-32 140.6 87 78.2
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 7.5e-32 140.6 87 78.2
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 7.5e-32 140.6 115 61.7
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 7.5e-32 140.6 110 63.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.7e-31 139.4 114 61.4
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.2e-31 139.0 88 73.9
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.8e-31 138.7 113 62.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.9e-31 137.9 147 51.0
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.3e-31 137.5 108 61.1
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 6.3e-31 137.5 87 75.9
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 8.3e-31 137.1 109 59.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 8.3e-31 137.1 106 67.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.3e-31 137.1 87 74.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.1e-30 136.7 114 62.3
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.1e-30 136.7 86 74.4
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-30 136.3 113 60.2
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 112 61.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-30 136.0 109 63.3
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.8e-30 136.0 91 69.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 87 75.9
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 2.4e-30 135.6 107 61.7
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.1e-30 135.2 114 57.9
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.4e-30 134.4 114 62.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 5.4e-30 134.4 113 58.4
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-29 133.3 114 62.3
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-29 133.3 87 74.7
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.0e-29 132.5 108 59.3
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.0e-29 132.5 116 61.2
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 2.7e-29 132.1 111 58.6
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.7e-29 132.1 85 69.4
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.7e-29 132.1 114 60.5
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.7e-29 132.1 87 77.0
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.7e-29 132.1 115 60.9
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 3.5e-29 131.7 96 65.6
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.5e-29 131.3 112 58.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 5.9e-29 131.0 91 70.3
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 7.8e-29 130.6 87 75.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 7.8e-29 130.6 113 55.8
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.3e-28 129.8 112 55.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-28 129.0 142 51.4
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 8.6e-28 127.1 89 68.5
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.5e-27 126.3 155 44.5
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.9e-27 125.9 92 72.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.9e-27 125.9 85 70.6
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.5e-27 125.6 114 56.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.3e-27 124.0 85 69.4
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-26 123.2 113 56.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.6e-26 122.9 113 54.9
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.7e-26 121.3 108 57.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 4.7e-26 121.3 117 56.4
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-25 119.8 85 68.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.8e-25 119.4 110 58.2
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 4.0e-25 118.2 116 54.3
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 8.9e-25 117.1 84 64.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.6e-24 115.5 121 52.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.4e-24 115.2 134 47.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.9e-23 112.1 82 67.1
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.9e-23 111.3 80 66.2
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 6.4e-23 110.9 72 69.4
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.4e-22 109.0 80 66.2
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.5e-21 105.1 112 52.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.9e-20 101.7 87 60.9
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.0e-20 101.3 81 65.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 6.6e-20 100.9 89 61.8
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-19 99.8 74 71.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-19 99.4 109 55.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.5e-19 99.0 72 72.2
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.5e-19 99.0 72 72.2
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.3e-19 98.6 113 54.0
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 5.6e-19 97.8 106 53.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.1e-18 95.9 66 71.2
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 8.0e-18 94.0 87 59.8
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.8e-17 92.8 88 53.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.2e-15 85.9 61 67.2
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.4e-14 82.4 51 74.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 3.2e-14 82.0 50 78.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 9.2e-14 80.5 82 48.8
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.2e-13 80.1 93 49.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.6e-13 79.7 68 50.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.0e-13 79.3 61 62.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 2.7e-13 79.0 93 49.5
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 3.9e-12 75.1 68 50.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 5.0e-12 74.7 64 65.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 3.3e-11 72.0 54 64.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.2e-10 70.1 72 55.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.1e-09 67.0 55 56.4
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.9e-09 63.9 46 65.2
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.5e-08 60.8 50 64.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.2e-07 59.3 69 50.7
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.9e-07 58.9 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.9e-07 58.9 65 44.6


User provided reference genes

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