Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 3.6e-41 171.4 103 100.0
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 2.1e-33 145.6 103 90.3
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 3.0e-27 125.2 111 65.8
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 3.3e-26 121.7 107 77.6
CARHR186980 Cardamine hirsuta HOM05D007325 ORTHO05D009251 9.5e-26 120.2 104 82.7
BolC9t53557H Brassica oleracea HOM05D007325 ORTHO05D009251 1.8e-24 115.9 104 79.8
C09p06380 Brassica napus HOM05D007325 ORTHO05D009251 6.8e-24 114.0 104 78.8
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.2e-23 113.2 104 77.9
BcaC04g23624 Brassica carinata HOM05D007325 ORTHO05D009251 2.0e-23 112.5 104 77.9
A09p05780 Brassica napus HOM05D007325 ORTHO05D009251 3.8e-22 108.2 104 75.0
BraA09t36219Z Brassica rapa HOM05D007325 ORTHO05D009251 3.8e-22 108.2 104 75.0
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 1.9e-21 105.9 102 73.5
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 7.1e-21 104.0 106 75.5
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 1.6e-20 102.8 106 74.5
C07p41670 Brassica napus HOM05D007325 ORTHO05D009251 1.3e-19 99.8 106 74.5
BcaNung02823 Brassica carinata HOM05D007325 ORTHO05D009251 6.6e-19 97.4 106 73.6
BolC7t44702H Brassica oleracea HOM05D007325 ORTHO05D009251 6.6e-19 97.4 106 73.6
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-16 89.4 68 72.1
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 7.6e-15 84.0 103 53.4
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 2.2e-14 82.4 99 53.5
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.8e-14 81.6 65 70.8
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 4.9e-14 81.3 99 61.6
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 4.9e-14 81.3 104 59.6
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 6.4e-14 80.9 100 63.0
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 2.4e-13 79.0 94 63.8
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 3.2e-13 78.6 99 61.6
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 3.2e-13 78.6 99 61.6
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 3.2e-13 78.6 99 61.6
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 7.1e-13 77.4 101 60.4
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 9.3e-13 77.0 100 62.0
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 9.3e-13 77.0 103 47.6
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 3.0e-11 72.0 99 48.5
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 3.0e-11 72.0 99 48.5
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 3.0e-11 72.0 99 48.5
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 3.0e-11 72.0 100 60.0
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 1.1e-10 70.1 85 68.2
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 5.6e-10 67.8 89 58.4
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 5.6e-10 67.8 106 41.5
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.8e-09 65.5 84 51.2
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 3.6e-09 65.1 93 47.3
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 4.8e-09 64.7 96 44.8
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 4.8e-09 64.7 107 43.0
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.2e-09 64.3 84 56.0
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.2e-09 64.3 84 56.0
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.2e-09 64.3 84 56.0
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 6.2e-09 64.3 93 47.3
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 6.2e-09 64.3 93 47.3
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.4e-08 63.2 103 43.7
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 1.4e-08 63.2 110 40.9
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.4e-08 62.4 71 56.3
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 2.4e-08 62.4 84 54.8
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 4.0e-08 61.6 100 56.0
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 1.2e-07 60.1 68 48.5
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.5e-07 59.7 101 51.5
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 3.4e-07 58.5 89 42.7
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 5.8e-07 57.8 74 48.6
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 7.6e-07 57.4 70 50.0
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 7.6e-07 57.4 65 49.2
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 9.9e-07 57.0 74 62.2
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 9.9e-07 57.0 89 42.7
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 9.9e-07 57.0 39 71.8
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 1.3e-06 56.6 90 43.3
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.7e-06 56.2 70 50.0
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 2.2e-06 55.8 81 46.9
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 2.2e-06 55.8 76 57.9
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 2.9e-06 55.5 89 39.3
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 3.8e-06 55.1 93 41.9
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 4.9e-06 54.7 70 50.0
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 4.9e-06 54.7 79 43.0
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 8.4e-06 53.9 85 44.7


User provided reference genes

Program Settings