Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 9.4e-115 417.5 336 100.0
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 2.5e-91 339.7 343 86.6
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 2.5e-91 339.7 349 85.4
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 4.9e-87 325.5 346 84.7
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 2.8e-82 309.7 341 79.2
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 3.7e-79 299.3 338 64.5
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 6.0e-77 292.0 338 63.9
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.7e-76 290.4 338 59.8
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 2.3e-76 290.0 339 74.6
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 2.8e-74 283.1 338 66.6
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 6.2e-74 282.0 312 68.3
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 7.6e-72 275.0 340 67.6
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 3.8e-71 272.7 332 61.7
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 8.4e-71 271.6 310 63.5
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 8.4e-71 271.6 310 63.5
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 7.8e-69 265.0 314 62.4
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 6.6e-68 261.9 314 62.1
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 6.6e-68 261.9 314 62.1
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 2.6e-56 223.4 318 57.2
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.4e-49 201.1 333 52.3
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.7e-47 194.1 314 53.2
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 2.9e-47 193.4 358 45.5
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 3.2e-46 189.9 348 46.8
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 7.1e-46 188.7 337 54.0
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.6e-45 187.6 327 49.2
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.7e-45 186.8 330 50.6
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 6.0e-45 185.7 297 50.8
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.3e-44 184.5 310 49.7
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 3.0e-44 183.3 343 43.1
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 5.1e-44 182.6 300 50.3
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 5.1e-44 182.6 328 47.9
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 6.7e-44 182.2 332 51.2
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.1e-43 181.4 353 41.4
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.3e-43 179.5 354 41.2
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 7.4e-43 178.7 319 46.1
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 9.6e-43 178.3 362 46.1
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 1.3e-42 177.9 347 41.2
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 1.6e-42 177.6 346 47.1
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.7e-42 176.4 347 40.9
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.7e-42 176.4 347 43.5
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 6.2e-42 175.6 331 44.1
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 6.2e-42 175.6 346 44.2
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 1.8e-41 174.1 323 52.9
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 3.1e-41 173.3 332 48.8
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 4.0e-41 172.9 320 44.4
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 4.0e-41 172.9 329 49.8
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 5.3e-41 172.6 314 50.3
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 5.3e-41 172.6 344 42.4
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 1.2e-40 171.4 333 46.2
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 2.6e-40 170.2 329 51.4
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 2.6e-40 170.2 351 43.0
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 2.6e-40 170.2 347 45.2
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 3.4e-40 169.9 298 50.7
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 4.5e-40 169.5 318 47.5
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 5.8e-40 169.1 329 49.8
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 5.8e-40 169.1 323 44.9
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 7.6e-40 168.7 331 48.0
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 1.0e-39 168.3 365 40.3
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 2.2e-39 167.2 306 53.3
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 2.9e-39 166.8 340 42.4
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 3.8e-39 166.4 333 41.4
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 3.8e-39 166.4 338 44.4
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 5.0e-39 166.0 334 43.1
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 1.1e-38 164.9 354 41.8
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.4e-38 164.5 341 43.1
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 7.1e-38 162.2 329 41.0
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 1.2e-37 161.4 341 40.2
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 2.7e-37 160.2 344 40.4
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 2.7e-37 160.2 357 42.0
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 4.6e-37 159.5 335 43.3
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 4.6e-37 159.5 336 41.4
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 7.9e-37 158.7 324 50.6
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.0e-36 158.3 343 44.6
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 1.3e-36 157.9 388 43.0
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 1.3e-36 157.9 351 46.7
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 5.1e-36 156.0 336 40.5
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 5.1e-36 156.0 351 51.0
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 6.7e-36 155.6 231 60.2
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 6.7e-36 155.6 336 42.9
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 6.7e-36 155.6 326 40.8
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 2.5e-35 153.7 330 47.3
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 4.3e-35 152.9 352 40.3
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 5.7e-35 152.5 342 43.3
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 7.4e-35 152.1 328 49.1
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 3.7e-34 149.8 318 42.1
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 3.1e-33 146.7 286 48.3
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 3.1e-33 146.7 336 45.5
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 5.0e-31 139.4 339 40.4
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 3.2e-30 136.7 367 56.9
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 9.4e-30 135.2 338 45.9
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 2.1e-29 134.0 332 40.7
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 2.7e-29 133.7 342 45.3
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 1.8e-28 131.0 318 35.5
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 3.9e-28 129.8 343 40.2
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 6.7e-28 129.0 294 46.3
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 6.3e-26 122.5 164 56.7
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 1.1e-25 121.7 352 38.4
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.4e-25 121.3 337 43.6
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.1e-25 118.6 153 52.3
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 7.7e-24 115.5 192 52.6
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.2e-23 114.0 317 43.8
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 2.9e-23 113.6 329 45.3
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 3.8e-23 113.2 325 47.1
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 5.0e-23 112.8 329 46.8
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 6.5e-23 112.5 318 39.6
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.4e-22 111.3 319 42.9
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 1.4e-22 111.3 156 52.6
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 1.4e-22 111.3 319 44.5
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 4.2e-22 109.8 329 55.9
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 7.2e-22 109.0 339 37.5
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 5.1e-20 102.8 307 35.5
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 1.1e-19 101.7 343 40.5
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 2.8e-18 97.1 344 36.6
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 1.8e-17 94.4 157 45.9
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 2.0e-16 90.9 324 40.7
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 8.5e-15 85.5 79 63.3
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.9e-14 84.3 85 60.0
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 7.2e-14 82.4 202 40.1
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 2.1e-13 80.9 187 36.9
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 2.3e-12 77.4 148 41.2
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 8.8e-12 75.5 61 62.3
SEGI_24344 Sequoiadendron giganteum HOM05D001976 ORTHO05D001960 7.7e-08 62.4 147 35.4
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.3e-07 61.6 32 90.6
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 8.5e-07 58.9 88 47.7
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.5e-06 58.2 80 53.8
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.5e-06 58.2 88 46.6
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.9e-06 57.8 92 43.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.9e-06 57.8 88 47.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.9e-06 57.8 82 48.8
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.2e-06 57.0 88 44.3
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 3.2e-06 57.0 78 48.7
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 4.2e-06 56.6 160 33.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.2e-06 56.6 86 46.5
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 4.2e-06 56.6 87 49.4
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 4.2e-06 56.6 86 46.5
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 5.5e-06 56.2 47 55.3
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.5e-06 56.2 82 50.0
BcaB01g03779 Brassica carinata HOM05D002337 ORTHO05D002412 7.2e-06 55.8 62 51.6
BolC3t14817H Brassica oleracea HOM05D002337 ORTHO05D002412 7.2e-06 55.8 62 51.6
Thecc.05G047800 Theobroma cacao HOM05D002337 ORTHO05D002412 7.2e-06 55.8 61 50.8
A03p20620 Brassica napus HOM05D002337 ORTHO05D002412 9.4e-06 55.5 62 50.0
BraA03t11304Z Brassica rapa HOM05D002337 ORTHO05D002412 9.4e-06 55.5 62 50.0
CSS0046032 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 9.4e-06 55.5 54 51.9
Gohir.D09G155300 Gossypium hirsutum HOM05D002337 ORTHO05D002412 9.4e-06 55.5 62 54.8
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.4e-06 55.5 32 84.4
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 9.4e-06 55.5 84 48.8


User provided reference genes

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