Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37840 Arabidopsis lyrata HOM05D003352 ORTHO05D003874 4.9e-30 133.7 60 100.0
AL6G37850 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 8.9e-24 112.8 49 98.0
AT5G25900 Arabidopsis thaliana HOM05D003352 ORTHO05D003874 2.2e-22 108.2 49 91.8
AL6G37830 Arabidopsis lyrata HOM05D003352 ORTHO05D003874 1.4e-21 105.5 49 95.9
Sp2g21750 Schrenkiella parvula HOM05D003352 ORTHO05D003874 1.4e-21 105.5 49 95.9
CARHR187520 Cardamine hirsuta HOM05D003352 ORTHO05D003874 9.2e-21 102.8 49 87.8
Thhalv10004043m.g Eutrema salsugineum HOM05D003352 ORTHO05D003874 9.2e-21 102.8 49 91.8
Carub.0006s2365 Capsella rubella HOM05D003352 ORTHO05D003874 1.6e-20 102.1 49 89.8
A06p36470 Brassica napus HOM05D003352 ORTHO05D003874 3.5e-20 100.9 49 89.8
C07p42020 Brassica napus HOM05D003352 ORTHO05D003874 3.5e-20 100.9 49 89.8
BolC7t44733H Brassica oleracea HOM05D003352 ORTHO05D003874 3.5e-20 100.9 49 89.8
BraA06t26570Z Brassica rapa HOM05D003352 ORTHO05D003874 3.5e-20 100.9 49 89.8
arahy.Tifrunner.gnm1.ann1.P3G561 Arachis hypogaea HOM05D003352 ORTHO05D003874 2.1e-17 91.7 49 77.6
arahy.Tifrunner.gnm1.ann1.XPY7J2 Arachis hypogaea HOM05D003352 ORTHO05D003874 2.1e-17 91.7 49 77.6
Potri.002G129700 Populus trichocarpa HOM05D003352 ORTHO05D003874 2.1e-17 91.7 48 85.4
arahy.Tifrunner.gnm1.ann1.F136KG Arachis hypogaea HOM05D003352 ORTHO05D003874 3.6e-17 90.9 49 77.6
arahy.Tifrunner.gnm1.ann1.TMG43S Arachis hypogaea HOM05D003352 ORTHO05D003874 3.6e-17 90.9 49 77.6
Dinv36012 Davidia involucrata HOM05D003352 ORTHO05D003874 3.6e-17 90.9 49 81.6
PGR031G3781 Punica granatum HOM05D003352 ORTHO05D003874 6.2e-17 90.1 49 81.6
Sabra02G0101700 Salix brachista HOM05D003352 ORTHO05D003874 8.1e-17 89.7 48 81.2
Hma1.2p1_0023F.1_g015330 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 1.1e-16 89.4 49 83.7
Hma1.2p1_0023F.1_g015320 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 1.4e-16 89.0 49 79.6
Haze_17587 Corylus avellana HOM05D003352 ORTHO05D003874 1.8e-16 88.6 48 81.2
Lj3g0020783 Lotus japonicus HOM05D003352 ORTHO05D003874 1.8e-16 88.6 49 77.6
Manes.05G169000 Manihot esculenta HOM05D003352 ORTHO05D003874 1.8e-16 88.6 48 81.2
THA.LOC104803409 Tarenaya hassleriana HOM05D003352 ORTHO05D003874 2.3e-16 88.2 49 81.6
CiPaw.16G051300 Carya illinoinensis HOM05D003352 ORTHO05D003874 3.1e-16 87.8 49 77.6
Lalb_Chr24g0392801 Lupinus albus HOM05D003352 ORTHO05D003874 3.1e-16 87.8 49 77.6
GSVIVG01009583001 Vitis vinifera HOM05D003352 ORTHO05D003874 3.1e-16 87.8 49 79.6
MSTRG.22277 Avicennia marina HOM05D003352 ORTHO05D003874 4.0e-16 87.4 49 79.6
Dinv39355 Davidia involucrata HOM05D003352 ORTHO05D003874 4.0e-16 87.4 49 79.6
Lj3g0015404 Lotus japonicus HOM05D003352 ORTHO05D003874 4.0e-16 87.4 49 75.5
Lj3g0017085 Lotus japonicus HOM05D003352 ORTHO05D003874 5.2e-16 87.0 49 75.5
Lj3g0023986 Lotus japonicus HOM05D003352 ORTHO05D003874 5.2e-16 87.0 49 75.5
SGA_v2.0_scaffold28G11770 Striga asiatica HOM05D003352 ORTHO05D003874 5.2e-16 87.0 49 79.6
vmacro04476 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 5.2e-16 87.0 49 75.5
vmacro04477 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 5.2e-16 87.0 49 75.5
COL.COLO4_26428 Corchorus olitorius HOM05D000546 ORTHO05D003874 6.8e-16 86.7 48 79.2
Phvul.005G183600 Phaseolus vulgaris HOM05D003352 ORTHO05D003874 6.8e-16 86.7 49 79.6
THA.LOC104806957 Tarenaya hassleriana HOM05D003352 ORTHO05D003874 6.8e-16 86.7 49 77.6
Thecc.08G016300 Theobroma cacao HOM05D003352 ORTHO05D003874 6.8e-16 86.7 48 79.2
vmacro04475 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 6.8e-16 86.7 49 73.5
vmacro04478 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 6.8e-16 86.7 49 75.5
Duzib093G0466 Durio zibethinus HOM05D003352 ORTHO05D003874 8.9e-16 86.3 48 79.2
Medtr2g105360 Medicago truncatula HOM05D003352 ORTHO05D003874 8.9e-16 86.3 49 75.5
PSO541G3721 Papaver somniferum HOM05D003352 ORTHO05D003874 8.9e-16 86.3 49 77.6
RcHm_v2.0_Chr6g0300021 Rosa chinensis HOM05D003352 ORTHO05D003874 8.9e-16 86.3 49 79.6
TAR381G0743 Trochodendron aralioides HOM05D003352 ORTHO05D003874 8.9e-16 86.3 49 77.6
Cfa018486 Carpinus fangiana HOM05D003352 ORTHO05D003874 1.2e-15 85.9 48 79.2
Lalb_Chr01g0011861 Lupinus albus HOM05D003352 ORTHO05D003874 1.2e-15 85.9 49 77.6
CDE07G0863 Ceratophyllum demersum HOM05D003352 ORTHO05D003874 1.5e-15 85.5 49 75.5
Ciclev10000902m.g Citrus clementina HOM05D003352 ORTHO05D003874 1.5e-15 85.5 49 77.6
Ciclev10000884m.g Citrus clementina HOM05D003352 ORTHO05D003874 2.0e-15 85.1 49 77.6
MELO3C016719.2 Cucumis melo HOM05D003352 ORTHO05D003874 2.0e-15 85.1 49 75.5
MD08G1040000 Malus domestica HOM05D003352 ORTHO05D003874 2.0e-15 85.1 49 77.6
QL02p006420 Quercus lobata HOM05D003352 ORTHO05D003874 2.0e-15 85.1 49 75.5
Sed0002142 Sechium edule HOM05D003352 ORTHO05D003874 2.0e-15 85.1 49 75.5
TWI56G0292 Tripterygium wilfordii HOM05D003352 ORTHO05D003874 2.0e-15 85.1 48 79.2
Aa31LG11G4920 Aethionema arabicum HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 77.6
CANSAT11G0813 Cannabis sativa HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 75.5
ClCG05G019490 Citrullus lanatus HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 75.5
MD08G1039800 Malus domestica HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 77.6
MD15G1034400 Malus domestica HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 77.6
Oeu028454.1 Olea europaea HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 75.5
PSO675G7937 Papaver somniferum HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 75.5
SGA_v2.0_scaffold14G07023 Striga asiatica HOM05D003352 ORTHO05D003874 2.6e-15 84.7 49 79.6
Atru.chr13.598 Acer truncatum HOM05D003352 ORTHO05D003874 3.4e-15 84.3 49 75.5
Aqoxy6G00921 Aquilegia oxysepala HOM05D003352 ORTHO05D003874 3.4e-15 84.3 49 73.5
CsaV3_4G033930 Cucumis sativus L. HOM05D003352 ORTHO05D003874 3.4e-15 84.3 49 75.5
Actinidia38039 Actinidia chinensis HOM05D003352 ORTHO05D003874 4.4e-15 84.0 49 75.5
PSO717G0014 Papaver somniferum HOM05D003352 ORTHO05D003874 4.4e-15 84.0 49 71.4
Actinidia29853 Actinidia chinensis HOM05D003352 ORTHO05D003874 5.8e-15 83.6 49 75.5
Cpa.g.sc357.4 Carica papaya HOM05D003352 ORTHO05D003874 5.8e-15 83.6 48 72.9
FvH4_2g40650 Fragaria vesca HOM05D003352 ORTHO05D003874 5.8e-15 83.6 48 77.1
FAN15G3076 Fragaria x ananassa HOM05D003352 ORTHO05D003874 5.8e-15 83.6 48 77.1
FAN20G2375 Fragaria x ananassa HOM05D003352 ORTHO05D003874 5.8e-15 83.6 48 77.1
Glyma.15G002200 Glycine max HOM05D003352 ORTHO05D003874 5.8e-15 83.6 49 77.6
QL02p006388 Quercus lobata HOM05D003352 ORTHO05D003874 5.8e-15 83.6 49 71.4
FvH4_2g22670 Fragaria vesca HOM05D003352 ORTHO05D003874 7.5e-15 83.2 49 75.5
FAN15G1250 Fragaria x ananassa HOM05D003352 ORTHO05D003874 7.5e-15 83.2 49 75.5
Glyma.13G371400 Glycine max HOM05D003352 ORTHO05D003874 7.5e-15 83.2 49 75.5
Eucgr.F02396 Eucalyptus grandis HOM05D003352 ORTHO05D003874 9.8e-15 82.8 49 75.5
Gohir.A06G015200 Gossypium hirsutum HOM05D003352 ORTHO05D003874 9.8e-15 82.8 48 77.1
Gohir.D06G013300 Gossypium hirsutum HOM05D003352 ORTHO05D003874 9.8e-15 82.8 48 77.1
Gorai.010G015900 Gossypium raimondii HOM05D003352 ORTHO05D003874 9.8e-15 82.8 48 77.1
Nn5g29392 Nelumbo nucifera HOM05D003352 ORTHO05D003874 9.8e-15 82.8 49 75.5
Nn5g31407 Nelumbo nucifera HOM05D003352 ORTHO05D003874 9.8e-15 82.8 49 75.5
FAN27G3412 Fragaria x ananassa HOM05D003352 ORTHO05D003874 1.3e-14 82.4 48 75.0
Lsat_1_v5_gn_6_114080 Lactuca sativa HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 77.6
Nn1g02637 Nelumbo nucifera HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 75.5
PSO063G6925 Papaver somniferum HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 71.4
Prupe.1G388500 Prunus persica HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 75.5
Rhsim07G0233900 Rhododendron simsii HOM05D003352 ORTHO05D003874 1.3e-14 82.4 50 70.0
Sed0020084 Sechium edule HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 71.4
Sc15g0006540 Simmondsia chinensis HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 69.4
SGA_v2.0_scaffold14G07022 Striga asiatica HOM05D003352 ORTHO05D003874 1.3e-14 82.4 49 77.6
ATR0705G191 Amborella trichopoda HOM05D003352 ORTHO05D003874 1.7e-14 82.0 49 73.5
SGA_v2.0_scaffold14G07017 Striga asiatica HOM05D003352 ORTHO05D003874 1.7e-14 82.0 49 77.6
VMungo0647G2265 Vigna mungo HOM05D003352 ORTHO05D003874 1.7e-14 82.0 49 71.4
Peaxi162Scf01514g00021 Petunia axillaris HOM05D003352 ORTHO05D003874 2.2e-14 81.6 49 75.5
TPR.G35981 Trifolium pratense HOM05D003352 ORTHO05D003874 2.2e-14 81.6 49 75.5
EL10Ac3g06760 Beta vulgaris HOM05D003352 ORTHO05D003874 2.9e-14 81.3 49 69.4
DCAR_019485 Daucus carota HOM05D003352 ORTHO05D003874 3.7e-14 80.9 49 73.5
Nitab4.5_0000068g0130 Nicotiana tabacum HOM05D003352 ORTHO05D003874 3.7e-14 80.9 49 75.5
Oeu020248.1 Olea europaea HOM05D003352 ORTHO05D003874 3.7e-14 80.9 49 75.5
Rhsim07G0233700 Rhododendron simsii HOM05D003352 ORTHO05D003874 3.7e-14 80.9 49 69.4
Solyc04g083160.2 Solanum lycopersicum HOM05D003352 ORTHO05D003874 3.7e-14 80.9 49 75.5
Sopen04g033160 Solanum pennellii HOM05D003352 ORTHO05D003874 3.7e-14 80.9 49 75.5
Cpa.g.sc357.6 Carica papaya HOM05D003352 ORTHO05D003874 4.9e-14 80.5 49 69.4
AUR62035325 Chenopodium quinoa HOM05D003352 ORTHO05D003874 4.9e-14 80.5 49 67.3
AUR62035923 Chenopodium quinoa HOM05D003352 ORTHO05D003874 4.9e-14 80.5 49 67.3
Psat5g308280 Pisum sativum HOM05D003352 ORTHO05D003874 4.9e-14 80.5 49 71.4
CAN.G371.84 Capsicum annuum HOM05D003352 ORTHO05D003874 6.4e-14 80.1 49 73.5
Gohir.A05G199066 Gossypium hirsutum HOM05D003352 ORTHO05D003874 6.4e-14 80.1 48 70.8
Migut.C00648 Erythranthe guttata HOM05D003352 ORTHO05D003874 8.3e-14 79.7 49 73.5
MD15G1034700 Malus domestica HOM05D003352 ORTHO05D003874 8.3e-14 79.7 48 64.6
PGSC0003DMG401011679 Solanum tuberosum HOM05D003352 ORTHO05D003874 8.3e-14 79.7 49 75.5
Actinidia38037 Actinidia chinensis HOM05D003352 ORTHO05D003874 1.1e-13 79.3 49 69.4
Cpa.g.sc357.5 Carica papaya HOM05D003352 ORTHO05D003874 1.1e-13 79.3 49 71.4
PSO732G0590 Papaver somniferum HOM05D003352 ORTHO05D003874 1.1e-13 79.3 49 69.4
Hund26611 Selenicereus undatus HOM05D003352 ORTHO05D003874 1.1e-13 79.3 49 69.4
CSS0041517 Camellia sinensis var. sinensis HOM05D003352 ORTHO05D003874 1.4e-13 79.0 49 71.4
Rhsim07G0234000 Rhododendron simsii HOM05D003352 ORTHO05D003874 1.4e-13 79.0 48 68.8
Lj4A778G47 Lonicera japonica HOM05D003352 ORTHO05D003874 1.9e-13 78.6 49 73.5
Cc10_g03710 Coffea canephora HOM05D003352 ORTHO05D003874 2.4e-13 78.2 49 67.3
SalBow7G3683 Salvia bowleyana HOM05D003352 ORTHO05D003874 2.4e-13 78.2 49 69.4
CSS0008797 Camellia sinensis var. sinensis HOM05D003352 ORTHO05D003874 3.2e-13 77.8 49 71.4
Lj4A48T66 Lonicera japonica HOM05D003352 ORTHO05D003874 3.2e-13 77.8 49 71.4
Ah.13g075160 Amaranthus hybridus HOM05D003352 ORTHO05D003874 4.1e-13 77.4 49 65.3
Cc00_g28260 Coffea canephora HOM05D003352 ORTHO05D003874 4.1e-13 77.4 49 67.3
Gohir.D05G201760 Gossypium hirsutum HOM05D003352 ORTHO05D003874 5.4e-13 77.0 48 68.8
Gorai.009G207500 Gossypium raimondii HOM05D003352 ORTHO05D003874 5.4e-13 77.0 48 68.8
Zm00001eb385100 Zea mays HOM05D003352 ORTHO05D003874 5.4e-13 77.0 48 66.7
Eucgr.F02398 Eucalyptus grandis HOM05D003352 ORTHO05D003874 7.1e-13 76.6 48 70.8
Hma1.2p1_0260F.1_g104540 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 7.1e-13 76.6 49 69.4
SalBow4G0688 Salvia bowleyana HOM05D003352 ORTHO05D003874 7.1e-13 76.6 49 69.4
SalBow4G3256 Salvia bowleyana HOM05D003352 ORTHO05D003874 7.1e-13 76.6 49 69.4
SalBow6G3480 Salvia bowleyana HOM05D003352 ORTHO05D003874 7.1e-13 76.6 49 69.4
DCAR_019489 Daucus carota HOM05D003352 ORTHO05D003874 1.6e-12 75.5 49 67.3
DCAR_020941 Daucus carota HOM05D001279 ORTHO05D003874 1.6e-12 75.5 49 65.3
PSO675G4484 Papaver somniferum HOM05D003352 ORTHO05D003874 1.6e-12 75.5 49 61.2
Os06g0569900 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 3.5e-12 74.3 59 52.5
MSTRG.1318 Avicennia marina HOM05D003352 ORTHO05D003874 4.6e-12 73.9 52 69.2
DCAR_019486 Daucus carota HOM05D003352 ORTHO05D003874 4.6e-12 73.9 49 63.3
unitig_26.g9823 Utricularia gibba HOM05D003352 ORTHO05D003874 4.6e-12 73.9 49 67.3
Lsat_1_v5_gn_4_123301 Lactuca sativa HOM05D003352 ORTHO05D003874 6.0e-12 73.6 49 65.3
Lj4C778G9 Lonicera japonica HOM05D003352 ORTHO05D003874 6.0e-12 73.6 49 65.3
HPP92_007630 Vanilla planifolia HOM05D003352 ORTHO05D003874 6.0e-12 73.6 49 63.3
Lsat_1_v5_gn_4_123261 Lactuca sativa HOM05D003352 ORTHO05D003874 7.8e-12 73.2 49 65.3
HanXRQChr13g0416921 Helianthus annuus HOM05D003352 ORTHO05D003874 1.0e-11 72.8 49 65.3
Os06g0570566 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 1.0e-11 72.8 59 52.5
Zm00001eb385070 Zea mays HOM05D003352 ORTHO05D003874 1.0e-11 72.8 46 65.2
SalBow6G1166 Salvia bowleyana HOM05D003352 ORTHO05D003874 1.7e-11 72.0 51 62.7
HPP92_007661 Vanilla planifolia HOM05D003352 ORTHO05D003874 1.7e-11 72.0 48 64.6
ECA232G3746 Erigeron canadensis HOM05D003352 ORTHO05D003874 2.3e-11 71.6 49 65.3
Os06g0570100 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 2.3e-11 71.6 59 50.8
ECA232G1737 Erigeron canadensis HOM05D003352 ORTHO05D003874 3.0e-11 71.2 49 65.3
DCAR_020942 Daucus carota HOM05D003352 ORTHO05D003874 5.1e-11 70.5 48 64.6
DCAR_020943 Daucus carota HOM05D003352 ORTHO05D003874 5.1e-11 70.5 48 64.6
ECA246G2720 Erigeron canadensis HOM05D003352 ORTHO05D003874 6.6e-11 70.1 49 59.2
Hund26610 Selenicereus undatus HOM05D003352 ORTHO05D003874 6.6e-11 70.1 49 61.2
HanXRQChr09g0268821 Helianthus annuus HOM05D003352 ORTHO05D003874 8.6e-11 69.7 49 63.3
HanXRQChr09g0268311 Helianthus annuus HOM05D003352 ORTHO05D003874 1.1e-10 69.3 49 63.3
SalBow6G5930 Salvia bowleyana HOM05D003352 ORTHO05D003874 1.5e-10 68.9 49 59.2
ATR0297G001 Amborella trichopoda HOM05D003352 ORTHO05D003874 1.9e-10 68.6 48 60.4
ATR0799G001 Amborella trichopoda HOM05D003352 ORTHO05D003874 3.3e-10 67.8 48 60.4
ATR1144G001 Amborella trichopoda HOM05D003352 ORTHO05D003874 3.3e-10 67.8 48 60.4
SalBow6G3262 Salvia bowleyana HOM05D003352 ORTHO05D003874 4.3e-10 67.4 49 63.3
HanXRQChr13g0416911 Helianthus annuus HOM05D003352 ORTHO05D003874 7.3e-10 66.6 49 57.1
HanXRQChr09g0268801 Helianthus annuus HOM05D003352 ORTHO05D003874 1.6e-09 65.5 49 59.2
Os06g0569500 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 2.1e-09 65.1 46 60.9
Os06g0568600 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 4.7e-09 63.9 48 52.1
SGA_v2.0_scaffold100G29618 Striga asiatica HOM05D000503 ORTHO05D000361 1.4e-08 62.4 49 59.2
Nn1g02640 Nelumbo nucifera HOM05D003352 ORTHO05D003874 3.1e-08 61.2 40 70.0
TWI09G0894 Tripterygium wilfordii HOM05D000016 ORTHO05D000433 2.9e-06 54.7 49 42.9
HPP92_008079 Vanilla planifolia HOM05D000025 ORTHO05D000040 3.7e-06 54.3 49 42.9
Aa31LG1G1710 Aethionema arabicum HOM05D000025 ORTHO05D000040 4.9e-06 53.9 51 37.3
HPP92_008078 Vanilla planifolia HOM05D000025 ORTHO05D000040 8.4e-06 53.1 47 44.7


User provided reference genes

Program Settings