Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 1.3e-66 256.1 123 100.0
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.3e-58 229.6 164 73.2
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 3.4e-54 214.9 161 69.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 7.6e-54 213.8 164 67.7
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 3.9e-50 201.4 155 67.7
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.1e-50 201.1 162 64.2
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 8.7e-50 200.3 161 64.0
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 8.7e-50 200.3 155 68.4
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-49 199.9 161 64.6
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 3.3e-49 198.4 161 63.4
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 2.8e-48 195.3 157 65.0
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 6.2e-48 194.1 161 61.5
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-47 193.4 161 62.7
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 6.9e-47 190.7 161 61.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 4.9e-45 184.5 161 60.2
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-44 183.3 161 59.6
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.2e-43 179.9 163 59.5
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.3e-40 169.9 163 56.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.1e-39 166.8 158 53.8
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.4e-39 166.4 156 53.2
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.4e-39 165.6 155 53.5
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 5.3e-39 164.5 156 51.9
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.3e-39 164.5 160 51.9
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 5.3e-39 164.5 158 53.2
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 6.9e-39 164.1 155 51.6
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 9.0e-39 163.7 156 52.6
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.2e-38 163.3 155 52.3
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.5e-38 162.9 156 54.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.4e-38 161.8 158 53.2
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.8e-38 161.0 158 51.3
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 5.8e-38 161.0 157 51.0
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 7.6e-38 160.6 156 50.6
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.3e-37 159.8 157 51.6
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.7e-37 159.5 157 51.6
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 2.9e-37 158.7 155 51.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.9e-37 158.7 156 50.0
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 4.9e-37 157.9 157 51.0
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.9e-37 157.9 157 51.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 6.4e-37 157.5 156 50.0
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 8.4e-37 157.1 157 51.0
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 8.4e-37 157.1 156 51.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-36 156.8 156 51.3
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.1e-36 156.8 156 50.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.1e-36 156.8 156 50.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.1e-36 156.8 156 50.6
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.9e-36 156.0 156 51.3
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.9e-36 156.0 158 50.0
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.2e-36 155.2 155 51.6
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.2e-36 154.8 156 50.0
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 4.2e-36 154.8 156 49.4
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.2e-36 154.8 156 49.4
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.2e-36 154.8 156 48.7
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.5e-36 154.5 157 49.7
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 5.5e-36 154.5 160 50.6
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 7.1e-36 154.1 156 49.4
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 7.1e-36 154.1 158 50.0
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 7.1e-36 154.1 157 49.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 7.1e-36 154.1 157 50.3
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.2e-35 153.3 155 50.3
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 2.1e-35 152.5 155 49.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.7e-35 152.1 157 49.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.7e-35 152.1 156 48.1
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 3.5e-35 151.8 162 47.5
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.5e-35 151.8 155 49.0
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 4.6e-35 151.4 156 49.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 4.6e-35 151.4 156 46.8
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 6.0e-35 151.0 153 50.3
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 7.9e-35 150.6 157 49.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 1.0e-34 150.2 156 46.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.0e-34 150.2 157 48.4
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.3e-34 149.8 155 48.4
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.3e-34 149.8 154 48.7
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.3e-34 149.8 157 47.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.8e-34 149.4 156 50.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.8e-34 149.4 156 50.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.0e-34 148.7 157 46.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.0e-34 148.7 155 48.4
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.0e-34 148.7 156 49.4
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 5.1e-34 147.9 157 46.5
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 5.1e-34 147.9 156 48.7
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.7e-34 147.5 155 47.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.1e-33 146.7 156 47.4
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.5e-33 146.4 155 50.3
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.5e-33 146.4 156 48.1
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.5e-33 146.4 160 48.1
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-33 146.0 93 69.9
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-33 146.0 93 68.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.9e-33 146.0 155 47.7
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.9e-33 146.0 156 48.1
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.9e-33 146.0 155 47.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.5e-33 145.6 155 49.7
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 3.3e-33 145.2 155 48.4
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 3.3e-33 145.2 154 47.4
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.3e-33 145.2 157 45.9
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.3e-33 145.2 156 48.1
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 4.3e-33 144.8 156 48.1
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.3e-33 144.8 156 48.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.3e-33 144.8 92 68.5
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 5.6e-33 144.4 156 47.4
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 5.6e-33 144.4 156 46.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 9.6e-33 143.7 156 46.2
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.6e-33 143.7 156 45.5
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-32 142.5 156 46.2
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.8e-32 142.1 156 48.7
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.7e-32 141.7 156 45.5
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.7e-32 141.7 156 47.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.4e-31 139.8 149 47.0
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.4e-31 139.8 156 46.2
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.4e-31 139.8 156 44.9
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.8e-31 139.4 93 63.4
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-31 139.0 156 46.2
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.1e-31 138.7 153 52.3
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-31 138.7 161 47.8
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 4.0e-31 138.3 92 66.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.9e-31 137.5 137 51.1
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.9e-31 137.5 181 40.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.5e-30 136.3 158 47.5
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.5e-30 136.3 156 46.2
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.0e-30 136.0 156 45.5
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.9e-29 132.1 157 42.7
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-28 129.8 93 63.4
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 4.2e-28 128.3 121 53.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.5e-28 127.9 156 43.6
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 9.3e-28 127.1 128 51.6
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.2e-27 126.7 162 46.9
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.1e-27 125.9 216 35.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.7e-26 120.6 129 49.6
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 8.7e-26 120.6 158 39.9
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 5.7e-25 117.9 93 60.2
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.6e-24 116.3 131 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 8.2e-24 114.0 158 39.9
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.5e-22 109.8 128 46.9
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 3.8e-21 105.1 127 44.1
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 5.5e-20 101.3 113 43.4
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 7.2e-20 100.9 65 69.2
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.4e-15 86.7 61 60.7
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-14 83.6 65 56.9
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 7.7e-14 80.9 96 45.8
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 7.7e-14 80.9 65 56.9
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.3e-13 80.1 115 35.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 7.2e-12 74.3 117 35.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 9.4e-12 73.9 96 41.7
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.8e-08 62.4 76 42.1
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.7e-08 62.0 117 37.6
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.1e-07 60.5 79 39.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 7.0e-07 57.8 37 64.9
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-06 56.6 67 41.8
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.6e-06 55.8 47 55.3


User provided reference genes

Program Settings