Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.7e-87 325.5 183 100.0
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.9e-62 241.9 184 78.8
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 4.3e-61 238.4 190 73.7
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.1e-55 219.5 189 72.0
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 8.6e-54 214.2 155 74.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.5e-53 212.6 192 69.8
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 3.6e-44 182.2 187 64.7
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 3.6e-44 182.2 187 64.7
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 2.6e-42 176.0 187 62.6
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.7e-41 173.3 187 62.0
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.8e-41 172.2 158 63.9
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-37 160.6 167 59.3
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 3.6e-36 155.6 170 55.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 9.3e-32 141.0 162 56.2
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.3e-32 141.0 182 52.2
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.2e-31 140.6 178 53.4
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.9e-31 137.9 181 52.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-31 137.9 180 52.8
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 5.1e-30 135.2 180 51.7
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 5.1e-30 135.2 180 51.7
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.1e-29 134.0 188 52.1
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 2.5e-29 132.9 167 53.9
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 4.3e-29 132.1 195 49.2
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 6.2e-28 128.3 185 51.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.4e-27 127.1 191 52.4
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-27 126.7 195 47.7
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.8e-27 126.7 195 47.7
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 4.0e-27 125.6 191 49.7
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 5.3e-27 125.2 191 48.2
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 6.9e-27 124.8 190 51.1
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.0e-26 123.2 185 49.2
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 4.5e-26 122.1 192 49.0
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.6e-26 121.3 195 48.2
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-25 120.6 185 48.6
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-25 120.6 187 48.7
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-25 120.6 187 48.7
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.3e-25 120.6 181 41.4
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 3.8e-25 119.0 194 49.5
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 6.4e-25 118.2 168 49.4
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.4e-25 117.9 182 42.9
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.5e-24 115.2 181 40.3
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 7.1e-24 114.8 184 48.4
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 9.3e-24 114.4 184 47.8
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-23 113.2 175 42.9
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.1e-23 113.2 179 40.2
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-23 112.8 184 47.3
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-23 112.8 155 49.7
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-23 112.8 155 49.7
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-23 112.5 181 40.9
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-23 112.5 182 41.8
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-23 112.1 181 40.3
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-23 111.7 195 41.5
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-23 111.7 182 41.8
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.0e-23 111.7 178 41.0
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-23 111.3 184 47.3
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.9e-23 111.3 181 40.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 162 41.4
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 182 41.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 3.9e-22 109.0 196 39.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 5.1e-22 108.6 188 41.0
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.9e-21 106.7 201 37.3
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.5e-21 106.3 195 40.0
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-21 105.9 195 40.5
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 3.3e-21 105.9 200 40.5
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 4.3e-21 105.5 199 45.2
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 9.6e-21 104.4 183 41.5
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.7e-20 102.4 189 41.3
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 4.8e-20 102.1 202 38.6
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 4.8e-20 102.1 193 41.5
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.8e-20 102.1 193 41.5
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 4.8e-20 102.1 199 39.2
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.2e-20 101.7 193 41.5
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.2e-20 101.7 193 41.5
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 8.2e-20 101.3 196 37.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.1e-19 100.9 193 40.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.8e-19 100.1 191 39.3
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 4.0e-19 99.0 189 37.0
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.0e-19 99.0 175 39.4
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 5.3e-19 98.6 191 38.2
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 5.3e-19 98.6 198 39.9
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 6.9e-19 98.2 126 52.4
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.9e-19 98.2 191 38.2
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 6.9e-19 98.2 188 38.3
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 9.0e-19 97.8 174 38.5
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-18 97.4 126 51.6
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.2e-18 97.4 195 40.0
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.2e-18 97.4 192 39.6
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.5e-18 97.1 195 36.4
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 2.0e-18 96.7 169 40.8
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.6e-18 96.3 177 38.4
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.6e-18 96.3 125 49.6
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.4e-18 95.9 199 35.7
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.4e-18 95.9 199 35.7
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 5.8e-18 95.1 190 36.3
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 7.6e-18 94.7 129 51.9
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.0e-17 94.4 189 35.4
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.3e-17 94.0 171 38.0
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.7e-17 93.6 193 39.9
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.8e-17 92.4 189 34.9
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 4.9e-17 92.0 186 36.0
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 6.5e-17 91.7 177 39.0
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.5e-17 91.7 209 33.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 6.5e-17 91.7 186 38.2
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 8.4e-17 91.3 188 36.7
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.1e-16 90.9 170 38.2
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-16 90.9 127 49.6
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-16 90.9 127 49.6
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.1e-16 90.9 187 39.0
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.1e-16 90.9 204 34.8
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.4e-16 90.5 184 38.6
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.9e-16 90.1 189 38.6
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 2.5e-16 89.7 190 36.8
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.2e-16 89.4 168 37.5
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 4.2e-16 89.0 187 38.5
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.2e-16 89.0 152 37.5
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 5.5e-16 88.6 196 37.8
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 1.2e-15 87.4 182 37.9
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 1.2e-15 87.4 186 39.2
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.6e-15 87.0 128 43.0
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.6e-15 87.0 177 38.4
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 2.1e-15 86.7 186 35.5
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.1e-15 86.7 175 37.1
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 2.7e-15 86.3 180 37.8
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 3.5e-15 85.9 192 34.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 4.6e-15 85.5 203 37.4
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 6.0e-15 85.1 153 35.9
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 6.0e-15 85.1 178 37.6
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.0e-14 84.3 144 40.3
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-14 83.6 126 41.3
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-14 83.6 126 41.3
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 3.9e-14 82.4 175 37.1
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 8.7e-14 81.3 199 35.2
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 8.7e-14 81.3 158 34.8
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.1e-13 80.9 195 35.9
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.5e-13 80.5 187 36.9
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.5e-13 79.7 235 29.4
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 4.3e-13 79.0 201 35.8
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.6e-12 77.0 113 43.4
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.8e-12 76.3 62 64.5
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 4.8e-12 75.5 149 34.9
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.8e-12 75.5 156 38.5
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 8.2e-12 74.7 227 32.6
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 3.1e-11 72.8 106 44.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 4.1e-11 72.4 177 36.2
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.2e-10 70.9 196 35.2
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.9e-10 68.6 175 34.3
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-09 67.4 61 54.1
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.2e-09 66.6 159 33.3
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.2e-09 66.6 195 34.9
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 2.2e-09 66.6 87 46.0
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 2.5e-08 63.2 154 31.8
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.2e-08 62.8 179 31.3
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 7.2e-08 61.6 113 34.5
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.2e-08 61.6 50 62.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.2e-08 61.6 50 62.0
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 9.4e-08 61.2 50 64.0
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.1e-07 60.1 182 33.0
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.1e-07 60.1 155 32.3
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.1e-07 60.1 121 33.1
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 6.1e-07 58.5 164 31.7
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 6.1e-07 58.5 94 46.8
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 6.1e-07 58.5 142 33.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 6.1e-07 58.5 132 33.3
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 6.7e-06 55.1 177 31.6
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 8.8e-06 54.7 151 31.1


User provided reference genes

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