Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 7.1e-245 850.1 421 100.0
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 3.9e-227 791.2 421 92.2
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 4.4e-218 761.1 422 89.3
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 8.2e-209 730.3 421 86.0
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 3.1e-208 728.4 422 86.3
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 9.1e-208 726.9 415 84.6
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 1.3e-190 669.8 419 79.5
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 6.6e-190 667.5 419 79.2
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 5.0e-174 614.8 404 77.7
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 2.1e-172 609.4 428 74.1
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 3.6e-172 608.6 404 77.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 8.9e-171 604.0 404 76.5
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 5.8e-170 601.3 404 76.0
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 8.6e-158 560.8 423 65.7
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.9e-145 519.2 317 82.0
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.6e-119 433.7 400 55.5
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 2.3e-118 429.9 426 52.8
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 7.4e-117 424.9 404 54.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 4.1e-115 419.1 432 50.7
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 9.1e-115 417.9 403 55.1
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 5.9e-114 415.2 428 52.3
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 2.2e-113 413.3 398 55.3
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 5.0e-113 412.1 400 53.8
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 8.5e-113 411.4 420 50.7
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.4e-112 410.6 400 53.5
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.9e-112 410.2 399 53.9
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.2e-112 409.5 391 55.0
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 7.2e-112 408.3 399 53.6
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 7.2e-112 408.3 399 53.9
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.6e-111 407.1 391 55.0
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 7.9e-111 404.8 391 54.7
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 7.9e-111 404.8 391 55.2
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.0e-110 404.4 399 53.6
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 8.8e-110 401.4 401 51.9
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.1e-109 401.0 426 49.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.0e-109 400.2 425 50.8
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.3e-109 399.4 389 51.7
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.7e-108 397.1 402 50.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.2e-108 396.7 399 52.6
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 4.8e-108 395.6 426 49.8
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 4.8e-108 395.6 393 55.0
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.8e-107 393.7 407 49.6
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.4e-107 393.3 391 51.2
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.1e-107 392.5 426 48.6
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.1e-107 392.5 375 56.0
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 9.1e-107 391.3 382 51.3
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.0e-105 387.9 391 50.6
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.0e-105 387.9 400 52.2
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 1.7e-105 387.1 391 51.4
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.2e-105 386.7 402 49.8
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-105 386.7 396 51.0
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 5.0e-105 385.6 394 50.3
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 6.5e-105 385.2 399 51.4
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.2e-104 382.9 397 49.9
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 5.5e-104 382.1 402 49.8
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.2e-103 380.9 422 47.4
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 1.2e-103 380.9 421 47.7
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.6e-103 380.6 400 51.0
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 3.6e-103 379.4 390 50.5
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 6.1e-103 378.6 394 50.3
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.8e-102 377.1 405 49.9
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.3e-102 376.7 396 48.2
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 8.8e-102 374.8 426 48.1
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-101 374.0 383 51.7
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 5.7e-101 372.1 374 51.1
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 7.4e-101 371.7 413 48.9
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.2e-100 370.2 416 47.4
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 3.7e-100 369.4 393 49.4
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 4.8e-100 369.0 406 50.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 6.3e-100 368.6 365 53.4
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 9.1e-99 364.8 398 49.5
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 9.1e-99 364.8 396 47.5
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-98 364.0 404 48.5
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.6e-98 363.2 378 50.3
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 4.5e-98 362.5 391 48.3
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.3e-97 360.9 395 47.1
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.7e-97 360.5 396 47.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.2e-97 360.1 403 48.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 5.0e-97 359.0 397 47.9
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 3.6e-95 352.8 432 45.1
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.0e-94 349.7 400 47.8
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 4.0e-94 349.4 403 48.6
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.3e-93 346.3 401 47.6
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 9.7e-93 344.7 405 45.2
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.7e-92 344.0 387 48.1
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.2e-92 343.6 398 48.2
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.4e-91 340.1 399 47.9
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 9.1e-91 338.2 396 46.7
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 9.1e-91 338.2 405 46.7
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 2.7e-90 336.7 385 46.2
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.9e-89 333.2 385 47.8
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.8e-89 332.8 391 47.8
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.9e-88 330.5 390 45.4
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 5.2e-86 322.4 392 45.4
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 2.0e-85 320.5 364 49.2
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 3.4e-85 319.7 180 86.7
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 2.4e-83 313.5 383 43.6
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 6.1e-79 298.9 388 43.8
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 3.0e-78 296.6 394 43.4
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 4.0e-78 296.2 382 44.2
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-77 294.3 322 49.1
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 4.9e-76 289.3 389 44.0
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 1.2e-74 284.6 291 51.2
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 3.0e-70 270.0 183 78.1
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 3.0e-65 253.4 298 45.6
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.2e-62 242.7 276 48.6
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 6.4e-60 235.7 180 69.4
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 4.6e-58 229.6 311 42.1
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 6.6e-57 225.7 236 47.0
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 2.5e-56 223.8 403 33.5
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 5.6e-56 222.6 199 53.8
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.6e-55 221.1 271 45.4
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.6e-55 221.1 244 47.5
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 8.1e-55 218.8 176 61.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.1e-54 218.4 219 51.6
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 6.8e-54 215.7 375 38.4
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 3.2e-51 206.8 211 51.7
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.3e-49 201.4 257 44.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.9e-49 199.9 381 33.9
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.9e-46 188.7 162 54.3
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 9.0e-38 162.2 189 48.1
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-37 161.0 317 33.8
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.4e-35 154.8 225 38.7
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 6.0e-34 149.4 180 42.8
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-33 147.1 274 35.4
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-32 145.2 198 43.9
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-30 138.7 140 49.3
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.2e-28 131.0 220 40.5
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 3.8e-28 130.2 190 41.1
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 2.7e-26 124.0 102 57.8
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-21 107.5 110 53.6
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.5e-21 106.7 114 49.1
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.9e-21 105.5 110 51.8
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-18 98.6 114 47.4
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.2e-15 86.3 102 46.1
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.0e-14 83.6 84 51.2
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 4.2e-11 73.6 82 46.3
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-09 68.6 49 63.3
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.3e-06 56.6 83 36.1


User provided reference genes

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