Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-230 802.0 399 100.0
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-229 798.1 399 99.5
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.6e-169 598.2 386 81.9
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-87 327.0 238 75.2
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.1e-61 238.8 236 57.6
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 1.4e-53 214.5 219 61.2
AL5G22900 Arabidopsis lyrata HOM05D025973 ORTHO05D012773 7.2e-53 212.2 193 58.0
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 5.1e-51 206.1 214 57.5
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 9.0e-48 195.3 229 50.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.4e-47 193.4 226 53.5
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.7e-46 191.0 213 53.1
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.4e-43 181.4 214 51.4
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 8.2e-41 172.2 212 49.5
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.5e-38 162.5 261 41.8
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.5e-34 151.4 97 73.2
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 3.3e-34 150.2 214 46.7
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.4e-32 144.1 86 77.9
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.5e-31 140.2 232 41.8
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.9e-29 134.4 220 41.8
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-25 121.7 169 43.8
Carub.0003s0473 Capsella rubella HOM05D004201 ORTHO05D011677 3.7e-25 120.2 112 67.0
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-20 105.1 227 36.1
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-19 100.9 166 41.6
Sp5g21160 Schrenkiella parvula HOM05D010153 ORTHO05D012295 4.0e-19 100.1 160 36.9
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 8.8e-19 99.0 200 37.5
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-18 98.6 233 35.2
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-18 97.8 156 39.7
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 3.4e-18 97.1 154 41.6
Sp7g10020 Schrenkiella parvula HOM05D010153 ORTHO05D012295 4.4e-18 96.7 174 34.5
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-17 95.1 155 41.3
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-17 94.0 155 40.6
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.3e-17 92.8 227 35.7
Sp6g10120 Schrenkiella parvula HOM05D025973 ORTHO05D012295 8.3e-17 92.4 145 35.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.4e-16 91.7 209 37.3
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-16 90.9 212 34.4
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-16 90.9 149 40.3
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 2.4e-16 90.9 157 38.9
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-16 90.1 157 40.8
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 4.1e-16 90.1 221 34.8
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 7.0e-16 89.4 152 38.8
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.0e-16 89.4 179 36.3
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-15 88.6 156 38.5
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-15 88.2 222 33.8
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-15 88.2 155 38.1
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-15 88.2 155 38.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.6e-15 88.2 155 38.7
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-15 87.8 155 39.4
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 2.7e-15 87.4 155 40.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 3.5e-15 87.0 205 33.7
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 3.5e-15 87.0 138 39.1
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 3.5e-15 87.0 205 33.7
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-15 86.7 148 39.2
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-15 86.7 157 38.2
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-15 86.7 157 38.2
Sp2g08000 Schrenkiella parvula HOM05D025973 ORTHO05D012295 4.5e-15 86.7 145 35.9
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-15 86.3 155 38.7
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-15 86.3 213 34.7
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-15 86.3 155 38.7
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 7.7e-15 85.9 155 39.4
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.0e-14 85.5 192 35.9
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-14 85.1 224 33.5
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-14 85.1 179 36.3
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 1.3e-14 85.1 145 39.3
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-14 84.7 169 37.9
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 2.2e-14 84.3 157 36.3
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.2e-14 84.3 195 32.8
SpUn1142_0010 Schrenkiella parvula HOM05D025973 ORTHO05D012295 2.2e-14 84.3 163 33.7
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.9e-14 84.0 149 37.6
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 3.8e-14 83.6 157 38.9
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 3.8e-14 83.6 158 36.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 6.5e-14 82.8 159 38.4
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 8.5e-14 82.4 150 38.0
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.5e-13 81.6 217 34.6
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.5e-13 81.6 176 37.5
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-13 81.3 157 35.7
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.9e-13 81.3 155 38.1
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 2.5e-13 80.9 154 36.4
Sp1g30460 Schrenkiella parvula HOM05D010153 ORTHO05D012295 4.2e-13 80.1 135 37.0
Sp4g07460 Schrenkiella parvula HOM05D010153 ORTHO05D012295 4.2e-13 80.1 155 34.8
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 5.5e-13 79.7 155 37.4
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.2e-13 79.3 150 35.3
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 7.2e-13 79.3 213 32.9
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 9.5e-13 79.0 179 35.2
Sp7g10650 Schrenkiella parvula HOM05D010153 ORTHO05D012295 1.2e-12 78.6 155 35.5
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.2e-12 78.6 239 31.8
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.2e-12 78.6 239 32.2
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.6e-12 78.2 224 30.8
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.6e-12 78.2 155 33.5
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-12 78.2 220 32.3
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.1e-12 77.8 94 46.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-12 77.8 226 32.3
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.7e-12 77.4 146 34.9
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.7e-12 77.4 160 35.6
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.7e-12 77.4 160 35.6
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 2.7e-12 77.4 205 35.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.6e-12 77.0 175 33.7
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.6e-12 77.0 205 36.6
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 3.6e-12 77.0 175 33.7
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-12 77.0 186 33.9
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 3.6e-12 77.0 186 33.9
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 4.7e-12 76.6 221 30.8
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.1e-12 76.3 146 35.6
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 6.1e-12 76.3 221 30.8
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 6.1e-12 76.3 204 32.4
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.8e-11 74.7 215 31.2
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.0e-11 73.9 185 33.0
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.0e-11 73.9 202 29.7
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 3.0e-11 73.9 215 32.1
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-11 73.9 230 32.2
SpUn0667_0010 Schrenkiella parvula HOM05D010153 ORTHO05D012295 3.0e-11 73.9 110 39.1
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.8e-11 72.8 151 34.4
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.8e-11 72.8 188 33.5
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.8e-11 72.8 215 30.7
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.8e-11 72.4 148 33.1
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 8.8e-11 72.4 164 35.4
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 8.8e-11 72.4 166 33.7
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.2e-10 72.0 218 29.4
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.6e-10 70.9 194 29.4
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.6e-10 70.9 173 34.1
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.4e-10 70.1 136 36.0
Sp3g25030 Schrenkiella parvula HOM05D010153 ORTHO05D012295 5.7e-10 69.7 109 38.5
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.5e-10 69.3 173 32.4
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.5e-10 69.3 161 33.5
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 7.5e-10 69.3 176 32.4
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 7.5e-10 69.3 168 33.3
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.8e-10 68.9 152 33.6
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 9.8e-10 68.9 202 31.7
SpUn0014_0020 Schrenkiella parvula HOM05D010153 ORTHO05D012295 9.8e-10 68.9 98 39.8
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.2e-09 67.8 235 31.5
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.8e-09 67.4 142 34.5
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 2.8e-09 67.4 126 36.5
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 6.3e-09 66.2 164 33.5
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 6.3e-09 66.2 225 31.6
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-08 65.5 203 27.6
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 1.8e-08 64.7 185 32.4
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 4.1e-08 63.5 143 33.6
Sp6g10080 Schrenkiella parvula HOM05D010153 ORTHO05D012295 4.1e-08 63.5 100 36.0
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.1e-08 63.5 215 33.5
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.0e-08 62.8 219 32.9
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.6e-07 61.6 221 32.1
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 3.5e-07 60.5 90 40.0
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 5.9e-07 59.7 164 31.7
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 7.7e-07 59.3 85 41.2
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 7.7e-07 59.3 85 41.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 7.7e-07 59.3 85 41.2
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 7.7e-07 59.3 85 41.2
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-06 57.8 149 36.2
Sp7g03190 Schrenkiella parvula HOM05D000171 ORTHO05D000101 2.9e-06 57.4 56 48.2
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 8.6e-06 55.8 187 30.5
SpUn0001_0990 Schrenkiella parvula HOM05D010153 ORTHO05D012295 8.6e-06 55.8 100 32.0


User provided reference genes

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