Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 4.7e-219 764.2 387 100.0
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 8.1e-203 710.3 400 88.5
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 4.6e-190 667.9 398 81.2
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.9e-188 662.5 403 81.4
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 3.7e-187 658.3 405 80.2
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.6e-174 615.1 404 76.2
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 6.3e-171 604.4 406 74.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.4e-170 603.2 409 74.6
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.4e-170 602.4 405 75.6
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 3.0e-149 532.3 488 57.6
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 6.5e-144 514.6 419 65.6
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 7.2e-143 511.1 401 65.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 5.6e-103 378.6 438 48.9
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-100 370.9 449 46.3
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 2.0e-100 370.2 449 46.1
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 3.8e-99 365.9 450 46.7
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.4e-98 364.0 423 47.8
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.4e-98 362.1 446 45.1
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.2e-97 360.9 447 47.7
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.6e-97 360.5 450 46.9
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.1e-97 360.1 447 47.4
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.1e-97 360.1 404 50.5
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.6e-97 359.0 458 45.2
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 7.8e-97 358.2 458 44.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.7e-96 357.1 440 45.0
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.7e-96 357.1 431 45.7
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 5.1e-96 355.5 446 46.4
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 6.6e-96 355.1 408 49.0
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.5e-95 354.0 442 45.9
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 3.3e-95 352.8 438 46.8
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 4.3e-95 352.4 446 46.4
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 9.6e-95 351.3 446 44.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.2e-94 350.9 468 44.4
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.6e-94 350.5 346 52.9
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.8e-94 349.7 444 46.6
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.8e-94 349.7 448 44.6
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.4e-93 347.4 362 51.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 4.0e-93 345.9 447 45.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 4.0e-93 345.9 447 45.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.9e-93 345.1 454 44.1
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-92 344.4 454 43.6
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.5e-92 344.0 454 43.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 3.4e-92 342.8 470 43.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.4e-92 342.8 418 48.3
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 7.6e-92 341.7 420 44.5
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 9.9e-92 341.3 417 46.3
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 9.9e-92 341.3 417 46.3
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.9e-91 339.7 424 45.5
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 4.9e-91 339.0 237 74.3
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.2e-90 336.3 474 41.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 3.2e-90 336.3 425 44.0
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 5.4e-90 335.5 394 47.2
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 5.4e-90 335.5 417 46.5
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 2.7e-89 333.2 416 46.9
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 4.6e-89 332.4 445 43.4
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.0e-89 332.0 424 44.6
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 6.0e-89 332.0 467 42.2
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 2.3e-88 330.1 450 43.1
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 3.9e-88 329.3 429 43.6
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 6.6e-88 328.6 427 43.8
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.9e-87 327.0 341 51.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.9e-87 327.0 492 40.4
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.5e-87 326.6 424 44.6
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.3e-87 326.2 459 41.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.3e-87 326.2 424 46.0
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.3e-87 326.2 433 44.8
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 7.3e-87 325.1 415 45.8
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.6e-86 323.9 431 43.6
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.6e-86 323.9 452 42.0
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.6e-86 322.8 330 53.6
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 4.8e-86 322.4 461 40.8
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 4.8e-86 322.4 455 42.6
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 6.2e-86 322.0 338 51.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 6.2e-86 322.0 405 46.7
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 8.1e-86 321.6 425 43.8
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 8.1e-86 321.6 425 44.2
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.1e-85 321.2 420 42.9
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.1e-85 321.2 426 44.4
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.4e-85 320.9 421 43.7
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 4.0e-85 319.3 414 44.0
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 9.0e-85 318.2 415 46.7
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 2.0e-84 317.0 436 43.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 4.5e-84 315.8 421 43.5
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 7.6e-84 315.1 431 43.6
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 2.2e-83 313.5 426 42.7
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 3.8e-83 312.8 472 38.8
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.4e-82 310.8 317 50.5
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 2.4e-82 310.1 331 51.4
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 7.1e-82 308.5 398 46.2
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.2e-81 307.8 391 42.5
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.1e-81 307.0 436 39.4
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 6.0e-81 305.4 317 50.5
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 3.9e-80 302.8 322 50.6
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 5.1e-80 302.4 328 51.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 6.7e-80 302.0 464 39.2
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 6.2e-78 295.4 472 37.9
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.4e-76 289.7 369 45.8
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.5e-76 289.3 408 43.9
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.3e-74 281.6 489 37.2
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 5.1e-72 275.8 349 46.7
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 8.7e-72 275.0 301 49.2
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.5e-68 264.2 295 51.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.7e-64 248.8 392 40.1
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.1e-61 241.5 405 37.8
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.0e-59 235.0 341 41.3
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-59 233.4 405 34.8
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.8e-59 233.0 416 36.5
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 5.5e-58 229.2 233 54.5
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.3e-56 223.8 401 34.9
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 9.7e-55 218.4 323 41.8
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.4e-53 214.5 324 38.6
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.8e-53 214.2 485 32.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.6e-52 210.3 295 43.1
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.4e-52 209.9 236 50.8
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 5.0e-51 206.1 542 30.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.0e-39 167.5 358 35.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 9.7e-39 165.2 309 38.5
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 6.3e-38 162.5 139 57.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-38 162.2 136 58.8
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 5.3e-37 159.5 135 56.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.7e-35 154.5 195 46.7
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.9e-34 151.0 180 45.6
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.0e-31 141.0 135 54.8
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.3e-30 138.3 135 54.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 7.7e-28 129.0 266 34.6
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 5.5e-26 122.9 166 44.0
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.6e-19 99.4 131 43.5
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.5e-18 98.2 104 51.9
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.1e-13 82.0 100 49.0
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 9.5e-10 68.9 54 59.3
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.3e-06 58.5 52 50.0


User provided reference genes

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