Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.0e-42 174.1 93 100.0
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 6.2e-40 167.2 93 94.6
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.6e-35 152.5 91 90.1
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.6e-35 152.5 91 89.0
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.7e-34 149.1 91 87.9
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.3e-34 148.7 91 87.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 3.0e-34 148.3 94 86.2
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.0e-34 148.3 91 86.8
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 3.3e-33 144.8 94 85.1
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 3.3e-33 144.8 94 85.1
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 3.3e-33 144.8 94 85.1
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 4.3e-33 144.4 94 86.2
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 4.3e-33 144.4 94 86.2
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.1e-31 139.8 89 83.1
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 2.3e-31 138.7 97 83.5
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 4.0e-31 137.9 91 83.5
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 4.0e-31 137.9 91 83.5
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 8.9e-31 136.7 91 82.4
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 8.9e-31 136.7 91 82.4
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.8e-30 134.0 90 76.7
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.4e-28 129.4 90 73.3
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 5.4e-28 127.5 92 75.0
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.6e-27 125.9 90 73.3
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 3.5e-27 124.8 91 73.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.6e-27 124.4 90 72.2
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 7.8e-27 123.6 90 71.1
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 7.8e-27 123.6 90 71.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-25 119.4 90 67.8
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.6e-24 115.9 83 71.1
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.8e-24 115.2 90 66.7
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.1e-23 113.2 90 66.7
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.8e-23 112.5 90 65.6
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.3e-23 112.1 90 64.4
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.0e-23 111.3 91 62.6
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.0e-23 111.3 83 71.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 5.2e-23 110.9 80 72.5
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 8.9e-23 110.2 84 66.7
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 8.9e-23 110.2 90 62.2
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 1.7e-21 105.9 68 86.8
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-21 105.5 82 67.1
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 2.2e-21 105.5 82 67.1
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 7.8e-19 97.1 86 61.6
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 5.6e-17 90.9 62 75.8
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.6e-14 82.0 78 59.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 8.4e-13 77.0 78 55.1
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 8.4e-13 77.0 78 55.1
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.4e-12 75.5 67 61.2
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 3.2e-12 75.1 94 47.9
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.2e-12 75.1 78 50.0
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 9.3e-12 73.6 77 54.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.6e-11 72.8 86 47.7
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 2.1e-11 72.4 94 45.7
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.7e-11 72.0 86 47.7
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.7e-11 72.0 86 47.7
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.6e-11 71.2 83 50.6
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 6.0e-11 70.9 75 49.3
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 6.0e-11 70.9 77 50.6
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 6.0e-11 70.9 78 51.3
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 7.8e-11 70.5 74 54.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.0e-10 70.1 89 42.7
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.0e-10 70.1 89 49.4
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.3e-10 69.7 69 52.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 1.7e-10 69.3 69 53.6
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.7e-10 69.3 74 52.7
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.3e-10 68.9 88 48.9
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 3.0e-10 68.6 83 44.6
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.0e-10 68.6 74 52.7
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 3.9e-10 68.2 96 44.8
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.6e-10 67.4 80 48.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 8.7e-10 67.0 75 48.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 8.7e-10 67.0 78 50.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 8.7e-10 67.0 85 49.4
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.1e-09 66.6 80 50.0
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-09 66.2 78 47.4
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.5e-09 66.2 83 49.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 1.9e-09 65.9 78 46.2
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.5e-09 65.5 77 49.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 3.3e-09 65.1 86 45.3
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.3e-09 64.7 90 43.3
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 4.3e-09 64.7 78 44.9
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 5.6e-09 64.3 53 62.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.6e-09 64.3 73 47.9
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 5.6e-09 64.3 82 46.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.6e-09 64.3 80 48.8
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 5.6e-09 64.3 80 48.8
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 7.3e-09 63.9 73 50.7
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.3e-09 63.9 73 46.6
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 9.6e-09 63.5 83 48.2
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.3e-08 63.2 74 50.0
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-08 63.2 79 45.6
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-08 63.2 79 45.6
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-08 63.2 52 57.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.6e-08 62.8 78 48.7
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.1e-08 62.4 96 46.9
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 2.1e-08 62.4 68 50.0
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.1e-08 62.4 78 44.9
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.1e-08 62.4 83 48.2
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 2.8e-08 62.0 52 57.7
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.8e-08 62.0 83 43.4
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 2.8e-08 62.0 46 65.2
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 3.6e-08 61.6 77 46.8
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.6e-08 61.6 83 48.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 3.6e-08 61.6 75 46.7
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 6.2e-08 60.8 82 42.7
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 6.2e-08 60.8 80 48.8
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 6.2e-08 60.8 69 49.3
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 8.1e-08 60.5 80 48.8
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 8.1e-08 60.5 80 48.8
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.1e-07 60.1 82 42.7
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.1e-07 60.1 73 49.3
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.4e-07 59.7 83 45.8
SpUn0007_0020 Schrenkiella parvula HOM05D003381 ORTHO05D372657 1.4e-07 59.7 34 91.2
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.4e-07 59.7 74 45.9
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.4e-07 59.7 75 49.3
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.8e-07 59.3 77 50.6
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.8e-07 59.3 78 41.0
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 1.8e-07 59.3 72 45.8
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.8e-07 59.3 83 45.8
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.8e-07 59.3 80 46.2
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.8e-07 59.3 81 49.4
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.8e-07 59.3 83 47.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.8e-07 59.3 86 45.3
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 3.1e-07 58.5 69 47.8
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 3.1e-07 58.5 77 49.4
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.1e-07 58.5 69 46.4
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.1e-07 58.5 80 47.5
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.1e-07 58.5 80 47.5
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 3.1e-07 58.5 49 59.2
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 3.1e-07 58.5 80 45.0
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.1e-07 58.5 76 46.1
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 4.0e-07 58.2 68 50.0
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.0e-07 58.2 73 45.2
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.3e-07 57.8 83 44.6
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 5.3e-07 57.8 83 44.6
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 5.3e-07 57.8 78 46.2
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 6.9e-07 57.4 74 45.9
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 6.9e-07 57.4 49 59.2
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 6.9e-07 57.4 73 45.2
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 9.0e-07 57.0 50 60.0
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 9.0e-07 57.0 54 48.1
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.0e-07 57.0 69 46.4
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.0e-07 57.0 69 46.4
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 9.0e-07 57.0 81 45.7
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.2e-06 56.6 95 38.9
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.5e-06 56.2 91 37.4
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-06 56.2 83 45.8
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 1.5e-06 56.2 52 55.8
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.6e-06 55.5 73 46.6
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-06 55.5 73 43.8
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.6e-06 55.5 77 42.9
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 3.4e-06 55.1 72 45.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 3.4e-06 55.1 82 41.5
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.4e-06 55.1 78 41.0
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 3.4e-06 55.1 54 51.9
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 4.4e-06 54.7 76 47.4
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 4.4e-06 54.7 76 47.4
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 4.4e-06 54.7 78 44.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.8e-06 54.3 80 46.2
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 5.8e-06 54.3 74 45.9
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 7.6e-06 53.9 75 38.7
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 7.6e-06 53.9 81 43.2
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 7.6e-06 53.9 75 44.0
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 9.9e-06 53.5 76 40.8
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.9e-06 53.5 80 45.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 9.9e-06 53.5 107 39.3


User provided reference genes

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