Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 7.8e-85 317.0 150 100.0
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 3.4e-80 301.6 148 96.6
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.2e-77 293.1 151 95.4
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 5.9e-77 290.8 148 93.2
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.9e-77 290.8 148 93.9
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 4.9e-71 271.2 150 88.7
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.7e-69 265.4 148 87.8
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.6e-68 260.8 147 85.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 8.6e-68 260.4 148 86.5
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.1e-67 260.0 148 85.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-67 259.2 148 85.1
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 5.6e-67 257.7 148 85.1
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 4.7e-66 254.6 150 84.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 4.7e-66 254.6 150 84.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 4.7e-66 254.6 150 84.0
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-65 253.4 148 85.1
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 3.1e-65 251.9 150 83.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 4.0e-65 251.5 150 83.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 5.2e-65 251.1 150 82.7
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-64 250.0 150 83.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.2e-64 250.0 150 83.3
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.2e-64 250.0 149 83.2
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.2e-64 250.0 148 83.8
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.9e-62 242.7 148 79.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-62 241.9 149 81.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 3.2e-62 241.9 149 81.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 3.2e-62 241.9 149 81.9
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-61 239.2 148 82.4
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 2.1e-61 239.2 148 82.4
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.1e-61 239.2 148 77.7
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.1e-61 239.2 148 75.0
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.7e-61 238.8 148 77.0
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 3.5e-61 238.4 148 77.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.6e-61 238.0 151 82.1
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.6e-61 238.0 148 76.4
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 4.6e-61 238.0 148 81.8
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 4.6e-61 238.0 148 81.8
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.6e-61 238.0 148 75.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 6.0e-61 237.7 148 75.7
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.3e-60 235.7 140 82.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.3e-60 235.7 148 76.4
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-60 235.3 151 80.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 3.0e-60 235.3 148 75.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.6e-60 233.8 151 77.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 8.6e-60 233.8 148 74.3
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.5e-59 233.0 148 74.3
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.9e-59 232.6 133 85.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.3e-59 231.9 148 74.3
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 3.3e-59 231.9 150 73.3
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 5.6e-59 231.1 148 75.0
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 7.3e-59 230.7 148 75.0
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 7.3e-59 230.7 148 75.0
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 7.3e-59 230.7 148 75.0
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 7.3e-59 230.7 148 75.0
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.5e-59 230.3 148 74.3
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.5e-59 230.3 148 73.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.5e-59 230.3 148 73.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 73.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.8e-58 228.8 148 75.7
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.8e-58 228.8 147 73.5
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.6e-58 228.4 148 73.0
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 6.2e-58 227.6 148 75.7
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 6.2e-58 227.6 148 75.7
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 8.1e-58 227.3 135 78.5
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.1e-57 226.9 148 72.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.4e-57 226.5 148 71.6
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-57 226.5 147 73.5
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-57 226.5 147 73.5
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.4e-57 226.5 149 75.8
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.8e-57 226.1 151 76.2
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.4e-57 225.7 148 73.6
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.4e-57 225.7 148 73.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 3.1e-57 225.3 148 74.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 4.0e-57 224.9 148 73.6
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 5.2e-57 224.6 148 70.9
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 8.9e-57 223.8 149 72.5
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 8.9e-57 223.8 148 74.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.2e-56 223.4 147 72.8
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.2e-56 223.4 148 71.6
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 1.5e-56 223.0 148 72.3
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.5e-56 223.0 149 73.8
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.0e-56 222.6 148 71.6
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.0e-56 222.6 148 72.3
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.0e-56 222.6 147 74.1
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 2.6e-56 222.2 148 71.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.4e-56 221.9 148 72.3
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 3.4e-56 221.9 149 73.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.4e-56 221.5 149 70.5
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 4.4e-56 221.5 148 74.3
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 5.8e-56 221.1 148 72.3
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.6e-56 220.7 148 72.3
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.6e-56 220.7 148 72.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 9.9e-56 220.3 148 73.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 9.9e-56 220.3 148 72.3
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 9.9e-56 220.3 148 72.3
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-55 219.9 148 70.9
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.7e-55 219.5 147 72.1
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.2e-55 219.2 148 71.6
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 2.2e-55 219.2 148 68.9
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.2e-55 219.2 140 76.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 2.9e-55 218.8 148 70.9
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.9e-55 218.8 147 71.4
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.9e-55 218.8 148 71.6
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.8e-55 218.4 149 72.5
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.4e-55 217.6 135 77.0
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 8.4e-55 217.2 148 68.9
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 8.4e-55 217.2 148 70.9
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 8.4e-55 217.2 148 70.9
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.1e-54 216.9 148 68.9
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-54 216.5 149 69.8
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-54 215.7 135 76.3
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.4e-54 215.7 135 76.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 4.1e-54 214.9 147 71.4
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 7.1e-54 214.2 148 68.2
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 7.1e-54 214.2 148 70.3
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.2e-53 213.4 148 68.2
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.6e-53 213.0 148 68.2
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 2.1e-53 212.6 148 69.6
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 2.7e-53 212.2 148 69.6
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 2.7e-53 212.2 148 70.3
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.7e-53 212.2 148 70.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 4.6e-53 211.5 148 69.6
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 4.6e-53 211.5 151 68.2
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.0e-52 210.3 148 68.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.7e-52 209.5 147 70.1
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 3.0e-52 208.8 148 68.9
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.9e-52 208.4 144 71.5
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.5e-51 206.5 134 76.1
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.5e-51 205.7 148 66.9
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 9.6e-51 203.8 148 65.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.4e-49 199.9 148 63.5
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.0e-48 196.1 149 63.8
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.0e-48 196.1 129 74.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.4e-48 195.3 136 72.8
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.4e-48 194.9 141 69.5
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 7.6e-48 194.1 148 62.8
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 5.4e-46 188.0 148 62.8
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.6e-45 186.4 119 73.1
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.0e-44 183.7 126 69.8
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-42 176.0 101 87.1
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 2.8e-42 175.6 148 62.8
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 3.6e-42 175.3 148 61.5
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 6.9e-41 171.0 137 64.2
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.0e-36 155.6 150 56.7
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 3.9e-36 155.2 101 74.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 8.1e-34 147.5 148 54.7
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.1e-33 147.1 96 74.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.3e-33 144.8 147 55.1
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.6e-32 142.5 149 50.3
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 7.1e-30 134.4 137 51.1
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 9.6e-27 124.0 130 56.9
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.5e-22 109.4 108 48.1
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 3.3e-19 99.0 69 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 9.0e-17 90.9 89 49.4
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.0e-16 89.7 75 65.3
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 2.4e-09 66.2 85 36.5
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.1e-06 57.4 39 64.1


User provided reference genes

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