Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.2e-129 465.7 244 100.0
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.2e-104 381.7 213 94.8
AL1G54420 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 3.0e-46 189.5 99 97.0
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 7.0e-43 178.3 95 96.8
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 1.2e-42 177.6 237 45.1
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 5.9e-42 175.3 253 41.1
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 2.1e-39 166.8 253 41.5
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 6.1e-39 165.2 253 41.5
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.5e-37 160.6 220 40.9
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 1.7e-36 157.1 252 38.5
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.2e-34 151.0 201 43.8
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 1.2e-34 151.0 245 41.6
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.0e-33 147.9 244 40.2
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.9e-33 146.4 253 37.9
CARHR184030 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.3e-32 142.9 99 72.7
CARHR180790 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.2e-31 141.0 100 72.0
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 2.1e-31 140.2 216 41.2
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 8.0e-31 138.3 248 39.5
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 5.2e-30 135.6 244 40.2
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 5.8e-29 132.1 220 38.6
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 7.5e-29 131.7 220 39.1
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 2.2e-28 130.2 244 36.5
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 3.7e-28 129.4 285 34.0
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 1.1e-27 127.9 285 34.0
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.4e-27 127.5 222 39.2
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 2.4e-27 126.7 221 38.0
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 3.2e-27 126.3 214 41.6
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 5.4e-27 125.6 229 38.0
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-26 124.4 244 34.4
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 1.6e-26 124.0 210 38.1
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.7e-26 123.2 158 44.3
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 6.0e-26 122.1 252 34.1
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 7.8e-26 121.7 193 39.9
Oeu023351.1 Olea europaea HOM05D007592 ORTHO05D004645 6.6e-25 118.6 211 37.4
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-24 117.9 214 39.7
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 2.8e-23 113.2 164 40.9
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 4.7e-23 112.5 225 36.0
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 8.0e-23 111.7 205 39.0
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 1.1e-22 111.3 262 32.8
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 3.1e-22 109.8 213 37.6
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.8e-22 108.6 233 35.2
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.2e-21 107.8 263 32.3
Atru.chr6.1370 Acer truncatum HOM05D007592 ORTHO05D004645 2.0e-21 107.1 180 39.4
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 5.8e-21 105.5 143 44.1
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 4.9e-20 102.4 263 30.4
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.9e-20 102.4 233 34.8
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.9e-20 102.4 233 34.8
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.9e-20 102.4 233 34.8
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.9e-20 102.4 234 34.2
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.9e-20 102.4 233 34.8
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.3e-20 101.7 233 34.8
Manes.16G106550 Manihot esculenta HOM05D007592 ORTHO05D004645 8.3e-20 101.7 156 43.6
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.9e-19 100.5 233 34.3
AL5G14150 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 3.2e-19 99.8 61 75.4
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 1.6e-18 97.4 233 34.8
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-18 97.1 208 33.7
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 3.5e-18 96.3 135 43.0
AL1G39540 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 6.0e-18 95.5 61 70.5
AT2G13760 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.0e-17 94.7 176 38.1
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.0e-17 94.7 221 34.8
Atru.ctg24.16 Acer truncatum HOM05D007592 ORTHO05D004645 1.3e-17 94.4 147 36.1
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 3.3e-16 89.7 225 31.1
AT1G66235 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.6e-15 87.4 216 33.3
Atru.chr3.1639 Acer truncatum HOM05D007592 ORTHO05D004645 8.1e-15 85.1 107 47.7
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 8.1e-15 85.1 216 33.8
Atru.chr8.363 Acer truncatum HOM05D007592 ORTHO05D004645 6.8e-14 82.0 150 34.7
Atru.chr4.1791 Acer truncatum HOM05D007592 ORTHO05D004645 2.6e-13 80.1 112 42.9
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 4.4e-13 79.3 69 53.6
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 7.5e-13 78.6 66 54.5
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 7.5e-13 78.6 66 54.5
Lsat_1_v5_gn_3_104540 Lactuca sativa HOM05D007592 ORTHO05D004645 9.9e-13 78.2 191 34.6
Atru.chr10.191 Acer truncatum HOM05D007592 ORTHO05D004645 1.3e-12 77.8 99 47.5
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.3e-12 77.8 120 40.0
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 2.2e-12 77.0 100 45.0
FAN09G0506 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.7e-12 76.3 247 31.2
SGA_v2.0_scaffold211G42135 Striga asiatica HOM05D007592 ORTHO05D004645 8.3e-12 75.1 170 35.3
C02p48070 Brassica napus HOM05D033289 ORTHO05D033072 1.1e-11 74.7 158 34.8
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 1.1e-11 74.7 212 30.7
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.4e-11 74.3 70 50.0
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-11 74.3 207 32.9
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 2.4e-11 73.6 100 45.0
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 5.4e-11 72.4 60 55.0
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 9.2e-11 71.6 70 50.0
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 1.6e-10 70.9 87 47.1
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 2.1e-10 70.5 148 36.5
Oeu019651.1 Olea europaea HOM05D007592 ORTHO05D004645 2.1e-10 70.5 220 29.5
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 2.7e-10 70.1 87 46.0
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 6.0e-10 68.9 157 33.8
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 7.8e-10 68.6 66 50.0
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 1.3e-09 67.8 99 39.4
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 1.7e-09 67.4 81 40.7
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 2.3e-09 67.0 123 33.3
CiPaw.03G181800 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.3e-09 67.0 220 27.7
A05p13600 Brassica napus HOM05D000230 ORTHO05D000176 3.0e-09 66.6 104 39.4
BraA05t20297Z Brassica rapa HOM05D000230 ORTHO05D000176 3.0e-09 66.6 104 39.4
CiPaw.15G037700 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.9e-09 66.2 143 36.4
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 5.1e-09 65.9 91 41.8
Atru.chr2.3826 Acer truncatum HOM05D007592 ORTHO05D004645 6.6e-09 65.5 81 49.4
BcaNung00662 Brassica carinata HOM05D007592 ORTHO05D004645 6.6e-09 65.5 204 29.4
CiPaw.01G307400 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.6e-09 65.5 143 36.4
CiPaw.08G134700 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.6e-09 65.5 143 36.4
CiPaw.08G157400 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.6e-09 65.5 143 36.4
Manes.12G071232 Manihot esculenta HOM05D007592 ORTHO05D004645 8.6e-09 65.1 123 40.7
Manes.03G086206 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-08 64.7 123 40.7
BraA06t26442Z Brassica rapa HOM05D007592 ORTHO05D004645 1.5e-08 64.3 67 47.8
CiPaw.02G030800 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.5e-08 63.5 130 37.7
RcHm_v2.0_Chr6g0296991 Rosa chinensis HOM05D007743 ORTHO05D004645 2.5e-08 63.5 201 32.8
SalBow3G0485 Salvia bowleyana HOM05D020195 ORTHO05D023117 2.5e-08 63.5 191 31.4
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 2.5e-08 63.5 106 43.4
TWI73G0420 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 2.5e-08 63.5 174 31.0
PGSC0003DMG400013032 Solanum tuberosum HOM05D007592 ORTHO05D004645 3.3e-08 63.2 134 34.3
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 4.3e-08 62.8 66 47.0
CiPaw.03G129800 Carya illinoinensis HOM05D001576 ORTHO05D000401 4.3e-08 62.8 168 33.9
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 5.6e-08 62.4 122 37.7
BcaC02g11304 Brassica carinata HOM05D000230 ORTHO05D000176 1.2e-07 61.2 102 39.2
C04p17790 Brassica napus HOM05D000230 ORTHO05D000176 1.2e-07 61.2 102 39.2
BolC4t23327H Brassica oleracea HOM05D000230 ORTHO05D000176 1.2e-07 61.2 102 39.2
CiPaw.15G050900 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.2e-07 61.2 141 35.5
FAN24G2509 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-07 61.2 151 31.8
PGSC0003DMG400002254 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.2e-07 61.2 119 37.8
Sp3g23340 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.6e-07 60.8 96 39.6
CiPaw.14G060500 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.8e-07 60.1 126 37.3
FvH4_4g12912 Fragaria vesca HOM05D007743 ORTHO05D004645 3.6e-07 59.7 231 28.6
PGSC0003DMG400029060 Solanum tuberosum HOM05D007592 ORTHO05D004645 4.7e-07 59.3 113 36.3
CiPaw.05G126800 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.1e-07 58.5 220 25.5
FvH4_3g26413 Fragaria vesca HOM05D001576 ORTHO05D000401 1.1e-06 58.2 204 28.4
TWI12G1451 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 1.1e-06 58.2 135 30.4
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 1.4e-06 57.8 71 43.7
Oeu053537.1 Olea europaea HOM05D007592 ORTHO05D004645 1.4e-06 57.8 105 40.0
CSS0033894 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-06 57.0 237 27.4
CSS0041981 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-06 57.0 237 27.4
BolC9t57561H Brassica oleracea HOM05D033289 ORTHO05D033072 3.1e-06 56.6 96 40.6
Atru.chr7.1149 Acer truncatum HOM05D007592 ORTHO05D004645 5.2e-06 55.8 74 44.6
CSS0010386 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.2e-06 55.8 130 31.5
Atru.chr4.386 Acer truncatum HOM05D007592 ORTHO05D004645 8.9e-06 55.1 118 31.4
CiPaw.16G006000 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.9e-06 55.1 63 42.9
FAN18G0507 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.9e-06 55.1 116 33.6


User provided reference genes

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