Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.0e-169 599.0 296 100.0
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 7.9e-158 560.5 294 94.2
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.7e-152 542.7 298 90.9
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.1e-151 540.0 297 90.6
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.9e-151 539.3 302 91.4
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 2.5e-151 538.9 297 90.9
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 6.8e-141 504.2 301 84.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 5.7e-140 501.1 297 84.2
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 5.7e-140 501.1 301 84.4
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.4e-138 496.5 308 80.8
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.5e-137 491.9 301 82.7
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 2.9e-136 488.8 299 82.3
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 2.5e-135 485.7 301 82.1
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 2.5e-135 485.7 301 82.1
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.2e-134 483.4 298 82.9
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.1e-111 407.1 302 71.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 6.4e-99 364.8 229 79.9
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 6.4e-99 364.8 229 79.9
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 2.2e-91 339.7 271 64.9
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 2.1e-89 333.2 306 59.5
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 3.0e-88 329.3 263 64.6
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 5.1e-88 328.6 301 59.8
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 9.6e-87 324.3 271 61.6
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 2.8e-86 322.8 283 61.1
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 6.2e-86 321.6 277 61.4
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 9.0e-85 317.8 290 60.3
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.5e-84 317.0 293 59.7
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.4e-84 315.8 293 59.4
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 4.5e-84 315.5 301 58.5
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 7.6e-84 314.7 271 61.3
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 2.9e-83 312.8 305 58.4
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 3.8e-83 312.4 293 56.7
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 4.9e-83 312.0 290 57.2
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 7.1e-82 308.1 269 63.6
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.1e-82 308.1 272 61.4
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.1e-81 306.6 272 61.4
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.1e-81 306.6 281 59.1
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 4.6e-81 305.4 264 62.5
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 6.0e-81 305.1 295 59.3
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.8e-80 303.5 308 56.2
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.8e-80 303.5 301 54.8
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.0e-80 302.8 278 61.5
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.9e-80 302.4 264 61.7
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 5.1e-80 302.0 295 55.6
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.9e-79 300.1 301 55.5
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 4.3e-79 298.9 268 60.1
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.4e-79 298.1 213 69.0
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.3e-78 297.4 310 55.2
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.6e-78 297.0 270 55.9
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-78 297.0 294 57.1
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-78 297.0 294 56.8
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.6e-78 297.0 283 59.0
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 3.6e-78 295.8 285 56.8
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.1e-77 294.3 299 54.2
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.1e-77 294.3 301 54.5
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.4e-77 293.9 311 55.3
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 3.1e-77 292.7 295 54.2
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 4.0e-77 292.4 296 56.1
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 5.3e-77 292.0 279 57.0
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 5.3e-77 292.0 293 56.3
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 5.3e-77 292.0 286 57.0
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 5.3e-77 292.0 270 57.8
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 5.3e-77 292.0 287 57.5
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 6.9e-77 291.6 169 85.2
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 9.0e-77 291.2 289 57.8
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 1.5e-76 290.4 237 58.6
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.5e-76 290.4 296 54.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 4.5e-76 288.9 307 54.1
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 7.6e-76 288.1 291 55.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 9.9e-76 287.7 296 53.4
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.2e-75 286.6 311 52.7
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.9e-75 286.2 291 56.4
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 4.9e-75 285.4 307 52.1
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 4.9e-75 285.4 221 64.7
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 6.4e-75 285.0 292 55.1
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 6.4e-75 285.0 304 54.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.4e-74 283.9 292 54.5
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.4e-74 283.1 215 63.7
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 7.1e-74 281.6 265 55.5
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.2e-73 280.8 300 51.7
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 2.7e-73 279.6 299 54.2
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 2.7e-73 279.6 264 58.7
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.6e-73 278.9 311 51.8
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.3e-72 277.3 214 63.6
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.3e-72 277.3 283 55.5
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.3e-72 276.6 215 64.7
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 6.7e-72 275.0 215 63.3
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 8.7e-72 274.6 314 51.3
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 3.3e-71 272.7 303 51.5
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 3.3e-71 272.7 224 60.7
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 5.6e-71 271.9 281 53.0
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 2.1e-70 270.0 229 59.8
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 2.8e-70 269.6 221 63.3
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 3.7e-70 269.2 268 56.3
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 3.7e-70 269.2 306 51.3
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 8.1e-70 268.1 218 62.4
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 8.1e-70 268.1 325 48.9
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 4.0e-69 265.8 272 54.8
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 5.3e-69 265.4 230 60.0
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 2.6e-68 263.1 287 52.6
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.8e-68 261.9 219 61.2
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 4.2e-66 255.8 219 58.9
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 7.1e-66 255.0 218 58.3
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.9e-64 249.2 216 57.9
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.9e-64 249.2 216 57.9
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.9e-64 249.2 274 50.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.9e-63 246.9 220 55.0
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.0e-59 234.6 221 56.6
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 1.9e-58 230.3 231 57.6
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 9.3e-58 228.0 237 56.1
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.2e-57 227.6 206 55.3
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 1.8e-56 223.8 207 57.5
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 3.3e-55 219.5 217 51.6
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.6e-52 209.9 212 47.2
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 5.9e-52 208.8 212 50.9
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 7.2e-50 201.8 206 52.4
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.4e-48 197.6 122 82.0
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 6.5e-43 178.7 214 43.9
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.2e-42 176.0 219 48.4
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.2e-41 174.5 231 48.1
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 2.1e-41 173.7 234 41.5
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 6.1e-41 172.2 213 43.7
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 6.7e-40 168.7 211 44.5
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 2.9e-35 153.3 181 47.0
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.0e-35 152.5 182 46.7
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.7e-28 130.2 120 57.5
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.8e-22 110.2 138 42.8
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 6.5e-19 99.0 175 40.0
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 4.2e-18 96.3 78 59.0
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 2.3e-16 90.5 215 34.9
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.3e-16 90.5 61 63.9
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 4.0e-16 89.7 197 35.5
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 9.2e-13 78.6 87 48.3
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.8e-12 75.5 87 44.8


User provided reference genes

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