Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.9e-311 1071.6 547 100.0
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.1e-284 981.9 547 88.8
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.7e-273 945.7 545 85.5
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.0e-271 938.7 546 85.2
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.1e-264 914.4 552 85.5
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.7e-262 909.1 548 86.5
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 2.8e-244 848.6 555 77.3
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 4.6e-239 831.2 554 80.5
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.0e-238 827.8 556 76.4
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.9e-237 825.9 558 77.2
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 9.5e-237 823.5 554 76.4
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 6.8e-235 817.4 552 78.8
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.4e-232 809.7 550 76.7
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.4e-232 807.7 555 73.2
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 7.0e-232 807.4 559 71.2
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.0e-231 805.8 552 78.1
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 6.0e-231 804.3 548 78.3
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.9e-229 799.3 557 76.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 6.2e-228 794.3 563 72.1
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 8.1e-228 793.9 563 71.9
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-227 793.1 565 72.6
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.6e-223 778.1 554 74.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 6.0e-223 777.7 554 72.2
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-207 726.1 552 68.5
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 4.6e-207 724.9 554 69.5
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-205 720.3 548 71.4
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.9e-184 649.8 570 62.8
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 5.0e-177 625.2 572 55.1
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 7.9e-167 591.3 569 52.2
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.2e-160 569.3 573 52.2
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.2e-159 567.4 575 52.3
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.3e-158 563.1 651 49.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.4e-155 553.9 571 49.6
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.8e-155 553.5 559 51.3
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.6e-154 550.4 558 53.2
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.3e-153 547.4 580 50.0
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.7e-153 547.0 599 50.1
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-152 543.1 395 69.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.2e-152 542.7 560 51.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.6e-151 540.4 584 47.8
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.7e-151 539.7 565 49.2
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 4.7e-151 538.9 575 48.7
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.4e-150 537.3 582 50.5
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 3.0e-150 536.2 554 50.7
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 4.0e-150 535.8 554 50.7
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 2.6e-149 533.1 575 48.7
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.3e-148 528.1 589 50.9
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.4e-147 526.6 594 51.5
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 5.3e-147 525.4 557 49.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.2e-146 524.2 549 51.9
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.6e-146 523.9 567 49.6
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.0e-146 523.5 564 48.2
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 5.0e-145 518.8 568 47.5
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.2e-144 516.2 571 47.8
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-142 510.8 577 47.3
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.0e-142 509.2 615 48.6
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 4.8e-140 502.3 551 48.1
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 4.8e-140 502.3 571 49.4
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 3.1e-139 499.6 561 49.0
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 3.1e-139 499.6 557 47.8
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.0e-137 494.6 599 47.9
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 4.2e-136 489.2 618 44.5
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 5.5e-136 488.8 548 46.7
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 6.1e-135 485.3 461 53.1
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 6.1e-135 485.3 569 46.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.0e-134 482.6 604 46.4
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.2e-133 481.1 554 46.0
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 4.9e-132 475.7 590 48.1
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.3e-132 475.3 578 48.3
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 1.4e-131 474.2 563 45.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.4e-131 472.2 461 51.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.2e-130 471.1 475 51.6
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.5e-130 469.5 557 45.8
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 4.5e-130 469.2 621 44.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 4.5e-130 469.2 575 44.3
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 7.8e-130 468.4 590 44.4
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.3e-129 466.8 549 48.3
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 5.0e-129 465.7 619 44.6
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.7e-127 459.1 584 44.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.4e-126 457.6 457 51.4
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.8e-125 452.2 463 49.2
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 7.5e-125 451.8 611 45.8
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.5e-125 451.8 611 45.8
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.5e-125 451.8 472 49.8
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.9e-124 449.9 652 42.3
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.1e-123 448.0 585 45.6
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 5.4e-123 445.7 578 46.5
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.3e-121 440.3 297 75.1
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.1e-119 433.7 651 41.2
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.8e-119 433.3 456 49.8
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.4e-117 426.4 644 38.8
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.4e-117 426.4 607 44.0
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 4.4e-117 426.0 494 47.0
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 5.8e-117 425.6 291 75.3
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 9.8e-117 424.9 609 43.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.2e-111 407.9 426 48.1
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.3e-108 397.9 547 44.1
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.7e-108 397.5 422 50.5
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 7.8e-106 388.7 605 40.5
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.6e-105 385.6 472 45.3
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 4.3e-104 382.9 557 40.0
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.6e-103 380.9 499 43.5
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.4e-101 372.9 274 71.5
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.6e-98 364.4 560 39.1
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.9e-96 357.5 227 76.2
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.4e-94 350.5 588 40.1
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 5.8e-93 345.9 445 44.5
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 7.1e-91 339.0 437 40.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.0e-89 335.1 450 45.6
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.0e-89 335.1 446 40.1
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 4.8e-87 326.2 501 37.5
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 9.9e-85 318.5 349 48.4
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.7e-84 317.8 433 40.4
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 2.9e-84 317.0 655 36.0
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 4.9e-84 316.2 327 48.9
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 7.9e-82 308.9 453 37.5
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 4.8e-79 299.7 313 48.6
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-77 295.0 340 45.3
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.8e-77 292.7 354 45.2
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 7.6e-69 265.8 239 51.5
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 3.2e-67 260.4 304 44.4
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 9.7e-64 248.8 237 54.0
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.7e-60 238.0 235 51.1
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.7e-55 220.3 244 48.0
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.9e-54 216.1 269 47.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.0e-52 212.2 273 45.8
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 2.1e-50 204.5 330 37.0
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.3e-49 201.1 158 58.9
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.5e-48 198.4 233 45.5
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 3.7e-47 193.7 223 48.0
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.1e-46 192.2 132 62.1
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 5.5e-43 179.9 257 46.3
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-40 172.2 316 33.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.4e-38 164.5 238 41.6
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.7e-36 158.3 383 33.2
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.2e-35 153.7 149 50.3
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 2.7e-34 151.0 186 47.8
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 7.5e-32 142.9 229 43.7
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.8e-31 140.2 164 45.1
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.4e-30 138.7 182 42.3
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.6e-29 135.2 182 41.8
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.9e-29 133.3 182 41.2
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-28 131.0 182 41.8
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-28 131.0 182 41.8
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-28 131.0 182 41.8
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 5.0e-28 130.2 180 42.2
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 5.0e-28 130.2 104 58.7
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.2e-26 125.6 417 25.7
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 2.1e-26 124.8 167 43.1
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 5.2e-25 120.2 134 47.0
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.5e-24 118.6 223 42.2
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-23 115.2 103 52.4
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 4.9e-23 113.6 114 54.4
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 6.3e-23 113.2 96 54.2
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 9.1e-22 109.4 240 31.7
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-21 108.6 102 51.0
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-21 107.8 65 81.5
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 7.2e-19 99.8 134 40.3
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-18 98.6 125 44.0
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.7e-18 97.1 169 39.1
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 5.4e-14 83.6 182 48.9
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.2e-14 82.8 82 47.6
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.7e-13 81.3 69 47.8
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.0e-12 79.3 78 48.7
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.2e-10 72.4 43 74.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 2.1e-10 71.6 264 32.6
BolC8t48198H Brassica oleracea HOM05D003812 ORTHO05D004393 4.7e-10 70.5 35 88.6
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.7e-10 70.5 77 48.1
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 6.2e-10 70.1 188 40.4
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-08 65.9 98 49.0
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 9.8e-08 62.8 103 46.6
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.7e-07 62.0 44 63.6
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 7.0e-06 56.6 47 57.4


User provided reference genes

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