Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G35900 Arabidopsis lyrata HOM05D001119 ORTHO05D000862 7.0e-50 200.3 100 100.0
AT5G24355 Arabidopsis thaliana HOM05D001119 ORTHO05D000862 6.6e-32 140.6 113 64.6
AT5G11220 Arabidopsis thaliana HOM05D001119 ORTHO05D000862 4.6e-09 64.7 138 34.8
Carub.0006s0969 Capsella rubella HOM05D001119 ORTHO05D000862 4.6e-09 64.7 112 38.4
BcaB08g37080 Brassica carinata HOM05D001119 ORTHO05D000862 1.0e-08 63.5 116 35.3
THA.LOC104815016 Tarenaya hassleriana HOM05D001119 ORTHO05D000862 1.0e-08 63.5 101 35.6
Thhalv10005652m.g Eutrema salsugineum HOM05D001119 ORTHO05D000862 1.8e-08 62.8 114 34.2
Manes.16G121000 Manihot esculenta HOM05D001119 ORTHO05D000862 1.8e-08 62.8 107 32.7
AL6G21840 Arabidopsis lyrata HOM05D001119 ORTHO05D000862 2.3e-08 62.4 112 36.6
BcaC01g02098 Brassica carinata HOM05D001119 ORTHO05D000862 2.3e-08 62.4 116 35.3
C03p68500 Brassica napus HOM05D001119 ORTHO05D000862 2.3e-08 62.4 116 35.3
BolC3t19109H Brassica oleracea HOM05D001119 ORTHO05D000862 2.3e-08 62.4 116 35.3
BcaC06g36315 Brassica carinata HOM05D001119 ORTHO05D000862 3.0e-08 62.0 116 35.3
A07p03190 Brassica napus HOM05D001119 ORTHO05D000862 3.0e-08 62.0 116 35.3
C07p05470 Brassica napus HOM05D001119 ORTHO05D000862 3.0e-08 62.0 116 35.3
BolC7t40947H Brassica oleracea HOM05D001119 ORTHO05D000862 3.0e-08 62.0 116 35.3
BraA06t25334Z Brassica rapa HOM05D001119 ORTHO05D000862 3.0e-08 62.0 116 35.3
BraA07t28116Z Brassica rapa HOM05D001119 ORTHO05D000862 3.0e-08 62.0 116 35.3
Potri.010G216400 Populus trichocarpa HOM05D001119 ORTHO05D000862 3.9e-08 61.6 110 33.6
PGR044G2085 Punica granatum HOM05D001119 ORTHO05D000862 3.9e-08 61.6 106 37.7
CARHR288970 Cardamine hirsuta HOM05D001119 ORTHO05D000862 8.7e-08 60.5 115 33.9
Ciclev10003740m.g Citrus clementina HOM05D001119 ORTHO05D000862 8.7e-08 60.5 99 34.3
Thhalv10015649m.g Eutrema salsugineum HOM05D001119 ORTHO05D000862 8.7e-08 60.5 106 36.8
Gohir.A07G027700 Gossypium hirsutum HOM05D001119 ORTHO05D000862 8.7e-08 60.5 119 32.8
Gohir.D07G031700 Gossypium hirsutum HOM05D001119 ORTHO05D000862 8.7e-08 60.5 119 32.8
Gorai.001G033100 Gossypium raimondii HOM05D001119 ORTHO05D000862 8.7e-08 60.5 119 32.8
Prupe.1G479500 Prunus persica HOM05D001119 ORTHO05D000862 8.7e-08 60.5 100 37.0
A06p22600 Brassica napus HOM05D001119 ORTHO05D000862 1.5e-07 59.7 115 34.8
CiPaw.07G222000 Carya illinoinensis HOM05D001119 ORTHO05D000862 1.5e-07 59.7 101 33.7
Aa31LG3G15970 Aethionema arabicum HOM05D001119 ORTHO05D000862 1.9e-07 59.3 126 32.5
BcaC04g19251 Brassica carinata HOM05D001119 ORTHO05D000862 1.9e-07 59.3 116 33.6
C09p65660 Brassica napus HOM05D001119 ORTHO05D000862 1.9e-07 59.3 116 33.6
BolC9t59389H Brassica oleracea HOM05D001119 ORTHO05D000862 1.9e-07 59.3 116 33.6
Duzib168G2357 Durio zibethinus HOM05D001119 ORTHO05D000862 1.9e-07 59.3 120 30.8
ClCG08G013300 Citrullus lanatus HOM05D001119 ORTHO05D000862 3.3e-07 58.5 102 33.3
COL.COLO4_18841 Corchorus olitorius HOM05D001119 ORTHO05D000862 4.3e-07 58.2 121 30.6
FvH4_2g29280 Fragaria vesca HOM05D001119 ORTHO05D000862 4.3e-07 58.2 101 35.6
FAN24G2681 Fragaria x ananassa HOM05D001119 ORTHO05D000862 4.3e-07 58.2 101 35.6
FAN27G2031 Fragaria x ananassa HOM05D001119 ORTHO05D000862 4.3e-07 58.2 101 35.6
Thecc.09G026700 Theobroma cacao HOM05D001119 ORTHO05D000862 4.3e-07 58.2 104 32.7
AL2G19300 Arabidopsis lyrata HOM05D001119 ORTHO05D000862 5.7e-07 57.8 113 32.7
MELO3C011255.2 Cucumis melo HOM05D001119 ORTHO05D000862 5.7e-07 57.8 98 33.7
CsaV3_2G032020 Cucumis sativus L. HOM05D001119 ORTHO05D000862 5.7e-07 57.8 98 33.7
FAN15G0351 Fragaria x ananassa HOM05D001119 ORTHO05D000862 5.7e-07 57.8 101 35.6
Ciclev10033619m.g Citrus clementina HOM05D001119 ORTHO05D000862 7.4e-07 57.4 99 34.3
MD15G1124100 Malus domestica HOM05D001119 ORTHO05D000862 7.4e-07 57.4 101 35.6
TWI38G1075 Tripterygium wilfordii HOM05D001119 ORTHO05D000862 7.4e-07 57.4 114 31.6
Sabra10G0167500 Salix brachista HOM05D001119 ORTHO05D000862 9.6e-07 57.0 98 36.7
Sed0006454 Sechium edule HOM05D001119 ORTHO05D000862 9.6e-07 57.0 104 35.6
BcaC04g23108 Brassica carinata HOM05D001119 ORTHO05D000862 1.3e-06 56.6 116 33.6
RcHm_v2.0_Chr6g0298091 Rosa chinensis HOM05D001119 ORTHO05D000862 1.3e-06 56.6 100 35.0
Glyma.20G021800 Glycine max HOM05D001119 ORTHO05D000862 1.6e-06 56.2 98 32.7
MD07G1180400 Malus domestica HOM05D001119 ORTHO05D000862 1.6e-06 56.2 105 33.3
Potri.006G252800 Populus trichocarpa HOM05D001119 ORTHO05D000862 1.6e-06 56.2 98 32.7
PGR142G2693 Punica granatum HOM05D001119 ORTHO05D000862 1.6e-06 56.2 97 35.1
Sc23g0006850 Simmondsia chinensis HOM05D001119 ORTHO05D000862 1.6e-06 56.2 99 32.3
Thhalv10005525m.g Eutrema salsugineum HOM05D001119 ORTHO05D000862 2.1e-06 55.8 109 33.0
MD08G1149000 Malus domestica HOM05D001119 ORTHO05D000862 2.1e-06 55.8 100 37.0
A09p10180 Brassica napus HOM05D001119 ORTHO05D000862 2.8e-06 55.5 116 33.6
BraA09t36664Z Brassica rapa HOM05D001119 ORTHO05D000862 2.8e-06 55.5 116 33.6
Cfa013160 Carpinus fangiana HOM05D001119 ORTHO05D000862 2.8e-06 55.5 98 32.7
Cc08_g00820 Coffea canephora HOM05D001119 ORTHO05D000862 2.8e-06 55.5 100 32.0
CARHR118190 Cardamine hirsuta HOM05D001119 ORTHO05D000862 3.7e-06 55.1 115 33.9
Sabra06G0197600 Salix brachista HOM05D001119 ORTHO05D000862 3.7e-06 55.1 98 30.6
Sp7g06000 Schrenkiella parvula HOM05D001119 ORTHO05D000862 3.7e-06 55.1 111 35.1
AT1G64870 Arabidopsis thaliana HOM05D001119 ORTHO05D000862 4.8e-06 54.7 121 31.4
arahy.Tifrunner.gnm1.ann1.NT92JM Arachis hypogaea HOM05D001119 ORTHO05D000862 4.8e-06 54.7 103 35.0
C09p12070 Brassica napus HOM05D001119 ORTHO05D000862 4.8e-06 54.7 116 32.8
BolC9t54097H Brassica oleracea HOM05D001119 ORTHO05D000862 4.8e-06 54.7 116 32.8
Glyma.06G064300 Glycine max HOM05D001119 ORTHO05D000862 4.8e-06 54.7 102 31.4
Nitab4.5_0000268g0010 Nicotiana tabacum HOM05D001119 ORTHO05D000862 4.8e-06 54.7 102 30.4
Cpa.g.sc1.267 Carica papaya HOM05D001119 ORTHO05D000862 6.2e-06 54.3 97 36.1
Lj4g0025779 Lotus japonicus HOM05D001119 ORTHO05D000862 6.2e-06 54.3 103 35.0
Manes.10G041300 Manihot esculenta HOM05D001119 ORTHO05D000862 6.2e-06 54.3 105 31.4
QL02p021952 Quercus lobata HOM05D001119 ORTHO05D000862 6.2e-06 54.3 98 33.7
Sabra08G0031200 Salix brachista HOM05D001119 ORTHO05D000862 6.2e-06 54.3 98 33.7
Sp7g07430 Schrenkiella parvula HOM05D001119 ORTHO05D000862 6.2e-06 54.3 114 31.6
arahy.Tifrunner.gnm1.ann1.4KY2C7 Arachis hypogaea HOM05D001119 ORTHO05D000862 8.2e-06 53.9 103 34.0
arahy.Tifrunner.gnm1.ann1.TW4QJ7 Arachis hypogaea HOM05D001119 ORTHO05D000862 8.2e-06 53.9 103 34.0
Lj1g0000301 Lotus japonicus HOM05D001119 ORTHO05D000862 8.2e-06 53.9 102 31.4
Nitab4.5_0000209g0080 Nicotiana tabacum HOM05D001119 ORTHO05D000862 8.2e-06 53.9 104 29.8


User provided reference genes

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