Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.4e-110 402.9 199 100.0
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.4e-97 359.0 198 90.4
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.8e-95 351.7 198 87.9
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.3e-90 336.7 199 83.4
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 2.8e-90 335.5 193 86.0
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 4.0e-89 331.6 197 84.8
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 4.9e-87 324.7 197 81.7
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 4.2e-86 321.6 197 81.2
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 4.2e-86 321.6 197 81.2
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 5.5e-86 321.2 194 82.5
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 9.3e-86 320.5 194 83.0
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.2e-85 320.1 197 81.2
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.0e-84 317.0 197 80.2
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 1.3e-82 310.1 196 77.0
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.8e-81 306.2 194 76.3
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.4e-81 305.8 198 74.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.5e-80 303.1 194 74.2
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.0e-80 302.8 194 74.2
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 2.0e-80 302.8 194 74.2
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 4.5e-80 301.6 201 73.6
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 2.9e-79 298.9 196 71.4
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 5.5e-78 294.7 194 73.2
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 7.9e-77 290.8 192 71.4
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 2.5e-75 285.8 190 72.6
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 9.6e-75 283.9 195 69.7
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 3.7e-74 282.0 194 71.1
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.4e-73 280.0 196 69.4
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 2.4e-73 279.3 197 69.0
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 4.1e-73 278.5 197 68.5
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 6.9e-73 277.7 195 68.2
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 7.6e-72 274.2 191 69.1
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 5.0e-71 271.6 191 70.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 6.5e-71 271.2 191 69.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 6.5e-71 271.2 194 69.6
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 6.5e-71 271.2 194 69.6
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.4e-70 270.0 196 66.3
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.9e-70 269.6 193 67.9
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.9e-70 269.6 190 68.9
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 3.2e-70 268.9 190 67.9
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 5.5e-70 268.1 196 65.8
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.2e-70 267.7 188 68.1
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 7.2e-70 267.7 188 69.1
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 9.3e-70 267.3 191 65.4
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.2e-69 266.9 196 65.3
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.6e-69 266.5 179 70.9
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.6e-69 266.5 191 68.6
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.7e-69 265.8 196 65.3
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 2.7e-69 265.8 186 68.8
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.6e-69 265.0 187 67.9
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 6.1e-69 264.6 192 66.1
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.0e-68 263.8 194 68.0
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.3e-68 263.5 196 65.3
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.3e-68 262.7 190 66.8
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.0e-68 262.3 192 66.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 6.7e-68 261.2 197 65.0
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 8.7e-68 260.8 194 64.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 8.7e-68 260.8 191 66.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 8.7e-68 260.8 192 65.6
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.5e-67 260.0 191 66.0
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.9e-67 259.6 193 66.3
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.5e-67 259.2 190 64.7
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 9.7e-67 257.3 181 69.1
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 9.7e-67 257.3 201 62.7
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 2.8e-66 255.8 188 63.3
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.8e-66 255.8 189 67.7
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 4.8e-66 255.0 188 67.6
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 4.8e-66 255.0 186 66.1
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.1e-65 253.8 175 71.4
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 3.1e-65 252.3 192 66.1
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 4.1e-65 251.9 190 63.7
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.5e-64 250.0 189 65.6
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 2.0e-64 249.6 181 66.9
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.0e-64 249.6 187 66.3
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.6e-64 249.2 199 62.3
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.3e-63 246.9 188 63.3
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.8e-63 245.4 171 69.0
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.4e-62 243.4 166 69.3
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.5e-62 242.7 195 60.5
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 5.5e-62 241.5 166 68.7
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 3.6e-61 238.8 191 62.8
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 3.9e-60 235.3 199 61.8
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 6.7e-60 234.6 186 61.8
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.8e-57 226.5 191 62.3
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 6.9e-57 224.6 174 61.5
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 4.7e-53 211.8 183 57.4
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.7e-53 211.8 188 54.8
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 7.9e-53 211.1 183 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 3.9e-52 208.8 186 56.5
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 5.7e-51 204.9 187 55.6
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 9.7e-51 204.1 193 56.0
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.7e-50 202.2 193 54.4
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 6.3e-50 201.4 147 65.3
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.6e-48 196.8 187 51.9
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.0e-44 182.2 160 57.5
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 9.7e-43 177.6 196 49.0
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.5e-32 142.1 115 56.5
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 7.7e-32 141.4 93 73.1
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 2.3e-28 129.8 111 62.2
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 5.2e-28 128.6 97 61.9
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.2e-26 123.2 77 76.6
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.4e-25 120.6 72 80.6
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.2e-24 117.5 77 74.0
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.2e-24 117.5 77 74.0
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 2.9e-23 112.8 81 66.7
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 3.6e-21 105.9 160 42.5
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 7.5e-19 98.2 154 40.3
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.3e-18 94.7 93 51.6
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.5e-11 71.6 162 27.8
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.4e-09 67.4 173 30.1
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-09 67.4 170 29.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.4e-09 66.6 173 30.6
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.4e-09 66.6 170 29.4
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.2e-09 66.2 170 30.0
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 4.1e-09 65.9 179 28.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 4.1e-09 65.9 165 29.7
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.1e-09 65.9 182 30.8
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 4.1e-09 65.9 163 29.4
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 5.4e-09 65.5 185 28.1
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.4e-09 65.5 167 26.9
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 5.4e-09 65.5 173 28.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 5.4e-09 65.5 172 29.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-08 64.3 179 27.9
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.6e-08 63.9 180 27.8
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.0e-08 63.5 173 27.2
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 2.0e-08 63.5 170 28.8
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.7e-08 63.2 170 28.2
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.5e-08 62.8 172 30.2
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.5e-08 62.8 173 27.2
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 3.5e-08 62.8 173 28.3
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 6.0e-08 62.0 173 28.9
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.0e-07 61.2 49 53.1
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.7e-07 60.5 170 28.2
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 3.0e-07 59.7 188 28.7
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 3.0e-07 59.7 173 28.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.9e-07 59.3 169 29.0
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 6.6e-07 58.5 184 27.2
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 6.6e-07 58.5 176 27.3
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 8.6e-07 58.2 170 27.6
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.5e-06 57.4 180 26.7
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.9e-06 57.0 183 26.8
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.5e-06 56.6 174 26.4
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.3e-06 56.2 166 27.7
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.3e-06 56.2 193 25.9
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 5.6e-06 55.5 173 28.3


User provided reference genes

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