Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 2.1e-281 971.8 534 100.0
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 1.1e-237 826.6 492 87.8
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 1.0e-235 820.1 498 84.9
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 2.3e-232 808.9 506 83.2
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 5.7e-231 804.3 502 82.9
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 2.0e-228 795.8 498 83.9
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 3.6e-217 758.4 504 77.6
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 3.3e-202 708.8 504 74.6
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 9.8e-199 697.2 504 74.8
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 2.2e-198 696.0 504 74.4
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 1.6e-193 679.9 507 73.0
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 2.0e-191 672.9 509 72.3
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 6.8e-184 647.9 513 68.4
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 2.4e-173 612.8 500 65.4
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 6.2e-145 518.5 498 55.0
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 2.2e-142 510.0 506 55.3
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 1.4e-141 507.3 486 56.0
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 9.3e-141 504.6 488 54.5
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 4.3e-138 495.7 502 54.8
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 7.4e-138 495.0 503 54.7
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 7.4e-138 495.0 491 54.2
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 7.4e-138 495.0 484 56.0
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 4.8e-137 492.3 484 56.6
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 1.1e-136 491.1 504 54.2
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 3.1e-136 489.6 489 55.0
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 4.1e-136 489.2 494 53.8
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 3.4e-135 486.1 499 52.9
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 5.0e-134 482.3 505 52.1
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 1.6e-132 477.2 501 50.9
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 1.8e-131 473.8 457 55.6
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 3.9e-131 472.6 496 51.2
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 3.3e-130 469.5 504 52.2
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 1.7e-129 467.2 495 52.3
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 2.8e-129 466.5 505 52.3
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 4.8e-129 465.7 503 51.5
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 1.1e-128 464.5 497 51.1
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.5e-127 460.7 512 50.8
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 2.9e-126 456.4 504 49.4
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.9e-126 456.4 521 49.7
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 2.9e-126 456.4 488 51.2
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 2.9e-126 456.4 490 51.0
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 3.2e-125 453.0 497 50.9
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 3.2e-125 453.0 489 51.5
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 5.5e-125 452.2 521 49.5
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 7.2e-125 451.8 508 49.8
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 1.2e-124 451.1 501 50.1
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 3.0e-123 446.4 494 51.6
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 6.7e-123 445.3 503 47.5
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 2.2e-121 440.3 507 48.5
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 3.7e-121 439.5 486 48.6
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 5.3e-120 435.6 513 48.7
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 4.5e-119 432.6 541 45.3
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 1.7e-118 430.6 500 48.4
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 3.6e-116 422.9 507 47.5
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 4.7e-116 422.5 508 49.4
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 3.9e-115 419.5 488 49.8
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 5.2e-115 419.1 495 49.3
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 1.5e-114 417.5 487 48.3
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 2.6e-114 416.8 427 51.8
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 2.6e-114 416.8 556 46.2
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 7.4e-114 415.2 452 52.9
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 7.4e-114 415.2 488 47.1
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 8.2e-113 411.8 551 44.1
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 9.1e-112 408.3 497 46.7
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 1.6e-111 407.5 468 48.7
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 4.5e-111 406.0 507 46.4
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 1.0e-110 404.8 498 45.0
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 2.2e-110 403.7 432 51.9
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 3.2e-109 399.8 458 49.1
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 4.2e-109 399.4 467 48.6
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 4.2e-109 399.4 467 48.6
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 4.2e-109 399.4 498 46.8
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 1.2e-108 397.9 513 44.2
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 2.7e-108 396.7 450 50.7
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 6.1e-108 395.6 499 46.1
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 6.7e-107 392.1 479 46.8
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 3.3e-106 389.8 483 47.4
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 7.5e-106 388.7 466 46.6
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 9.7e-106 388.3 408 52.0
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 1.3e-105 387.9 522 45.0
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 1.4e-104 384.4 517 43.7
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 9.1e-104 381.7 497 46.5
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 1.6e-103 380.9 510 43.5
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 3.2e-101 373.2 560 41.8
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 1.6e-100 370.9 503 45.9
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 1.8e-99 367.5 442 48.4
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 7.0e-96 355.5 532 41.7
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 3.8e-94 349.7 492 42.3
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 4.7e-92 342.8 363 52.9
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.8e-88 330.9 346 54.3
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 1.2e-87 328.2 493 39.4
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 4.3e-85 319.7 409 47.7
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 9.5e-85 318.5 416 44.0
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 1.2e-79 301.6 334 49.7
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 1.0e-78 298.5 509 36.7
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 5.0e-78 296.2 509 36.5
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 9.9e-66 255.4 487 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 1.4e-64 251.5 525 32.8
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 7.3e-61 239.2 342 39.5
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 3.6e-60 236.9 336 41.4
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 8.1e-60 235.7 373 37.3
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 6.8e-59 232.6 287 42.5
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 8.9e-59 232.3 431 34.1
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 1.2e-55 221.9 217 53.0
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.9e-49 200.7 180 57.2
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 4.8e-44 183.3 197 50.8
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 2.2e-41 174.5 196 51.5
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 7.1e-40 169.5 232 43.1
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 7.9e-39 166.0 212 46.2
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 6.9e-35 152.9 193 47.7
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 1.3e-30 138.7 271 34.7
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 8.2e-28 129.4 164 42.7
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 4.3e-21 107.1 116 53.4
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 9.0e-19 99.4 105 56.2
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 1.7e-17 95.1 306 25.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 6.5e-17 93.2 103 53.4
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 8.5e-17 92.8 103 53.4
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.8e-14 85.1 87 48.3
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 6.7e-14 83.2 129 38.0
BcaC03g15934 Brassica carinata HOM05D006347 ORTHO05D007835 2.0e-10 71.6 73 56.2
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 2.6e-10 71.2 132 31.8
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 1.3e-09 68.9 70 51.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.2e-09 68.2 57 61.4
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 2.9e-09 67.8 65 55.4
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 2.7e-07 61.2 52 57.7
SEGI_37044 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 1.0e-06 59.3 89 37.1


User provided reference genes

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