Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.9e-285 983.8 495 100.0
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.2e-278 962.6 494 97.8
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.7e-269 931.0 496 94.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.0e-267 923.7 494 93.3
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 6.8e-263 910.2 495 91.9
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.0e-262 908.7 490 93.9
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.7e-261 905.6 492 92.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.9e-261 904.8 489 92.8
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.4e-261 903.3 494 92.1
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-261 903.3 498 91.4
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.4e-261 903.3 494 92.3
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-260 902.5 498 91.4
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.4e-260 902.5 498 91.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.4e-260 900.6 495 90.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.7e-258 895.6 505 89.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.6e-258 893.6 507 89.9
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 6.6e-258 893.6 496 90.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.6e-258 893.3 495 90.3
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 3.3e-257 891.3 496 90.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 9.6e-257 889.8 494 90.9
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.4e-255 885.9 497 89.7
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.4e-254 881.3 494 89.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 6.6e-250 867.1 493 89.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.6e-249 864.0 495 88.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-248 862.8 499 88.2
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 4.2e-244 847.8 490 87.3
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.6e-235 817.8 492 83.5
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.0e-226 790.0 527 78.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 8.5e-221 770.4 497 77.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.4e-220 769.6 493 78.5
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.8e-218 762.7 485 78.8
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.5e-217 759.6 486 78.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.5e-217 758.8 497 76.9
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.2e-216 755.7 496 75.8
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.8e-216 755.4 495 76.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.7e-216 755.0 493 76.3
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 6.3e-216 754.2 495 76.8
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 3.1e-215 751.9 491 77.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.5e-214 749.6 489 76.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 5.9e-214 747.7 496 76.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.7e-213 746.1 496 75.2
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.2e-213 745.7 497 75.7
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.9e-213 745.3 495 76.0
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 5.0e-213 744.6 485 76.9
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.5e-212 742.3 488 74.6
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.5e-212 741.1 491 75.2
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 2.7e-211 738.8 488 75.6
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.7e-211 738.8 489 75.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 7.9e-211 737.3 489 75.5
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-210 736.5 496 73.8
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-210 736.5 496 74.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.3e-210 735.7 490 75.3
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.3e-210 735.7 495 75.4
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 3.0e-210 735.3 491 73.9
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.1e-209 733.4 490 74.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.5e-209 733.0 492 75.0
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.0e-209 732.6 494 74.1
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-209 732.3 492 75.2
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.4e-209 731.5 490 74.9
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 4.4e-209 731.5 493 74.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 5.7e-209 731.1 490 74.9
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.4e-209 730.7 492 75.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.3e-208 729.9 485 75.5
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.2e-208 729.2 492 75.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.2e-208 729.2 491 73.5
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.2e-208 729.2 490 74.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.8e-208 728.8 490 74.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.8e-208 728.0 497 73.4
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-207 726.5 492 75.0
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.4e-207 725.7 485 76.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.1e-207 725.3 491 74.1
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.5e-206 723.0 493 73.6
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.0e-206 722.6 478 75.9
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.7e-205 719.5 493 73.6
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 2.2e-205 719.2 512 71.5
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.8e-205 718.4 485 75.5
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.8e-205 718.4 485 75.5
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 3.8e-205 718.4 487 72.9
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 5.0e-205 718.0 481 75.1
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.9e-204 716.1 485 74.6
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.9e-204 716.1 482 74.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 5.5e-204 714.5 480 74.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 9.4e-204 713.8 498 73.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 4.7e-203 711.4 478 74.3
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.7e-203 711.4 500 71.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.5e-201 706.4 480 73.1
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.4e-201 704.1 482 73.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.7e-200 703.0 492 72.4
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-199 699.5 490 72.7
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.2e-198 696.8 521 69.5
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.0e-198 696.0 483 72.7
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.0e-198 696.0 483 72.7
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 5.9e-198 694.5 490 70.6
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.7e-195 685.6 486 71.4
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.0e-194 683.7 487 70.4
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.8e-194 682.9 530 67.9
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.8e-194 682.9 483 71.0
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.5e-193 679.9 496 69.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 9.1e-191 670.6 494 68.2
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.2e-189 666.0 499 67.3
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.2e-187 660.2 492 69.7
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 3.6e-187 658.7 486 67.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.4e-186 656.8 452 72.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 6.8e-186 654.4 489 67.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.5e-185 653.3 498 65.7
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.4e-185 652.1 517 65.4
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.7e-184 649.8 583 59.2
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.8e-184 649.0 487 67.1
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.7e-184 648.7 486 66.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 9.1e-183 644.0 570 61.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.7e-182 642.5 488 65.4
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 7.7e-182 641.0 500 68.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.5e-180 636.0 487 67.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.5e-180 636.0 485 67.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 8.0e-179 630.9 482 66.0
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.8e-178 629.8 500 62.2
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 2.6e-177 625.9 490 67.8
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.8e-176 622.5 486 64.2
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.7e-176 622.1 497 66.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.9e-176 621.7 500 61.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-175 620.2 481 66.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 3.1e-175 619.0 474 66.7
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.9e-173 612.5 488 64.5
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.0e-170 602.1 401 74.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.2e-168 596.3 364 84.9
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-164 583.9 504 63.1
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 4.7e-163 578.6 503 59.2
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 3.5e-158 562.4 494 59.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 5.0e-157 558.5 378 75.1
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.5e-156 557.0 450 61.6
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-152 543.9 372 75.5
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.9e-148 530.0 395 68.1
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 9.5e-148 527.7 549 54.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.7e-147 525.4 394 69.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.2e-146 521.9 357 74.5
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.4e-144 515.0 344 76.5
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.2e-143 512.7 357 73.9
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 4.3e-140 502.3 393 67.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.6e-129 466.5 357 68.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 6.4e-128 461.8 471 52.9
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.2e-119 433.0 305 73.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-117 426.8 402 58.5
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.6e-113 411.8 280 73.9
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.0e-112 411.4 276 76.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.2e-111 406.0 272 75.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.6e-89 333.6 233 72.5
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.1e-87 328.2 461 39.9
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-80 303.9 247 67.6
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-77 294.3 188 78.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.3e-74 282.7 181 75.1
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 3.8e-72 276.6 204 70.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.7e-67 261.2 138 94.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.2e-60 238.4 200 61.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.8e-53 214.5 228 52.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 5.8e-52 209.5 144 72.2
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 7.5e-52 209.1 153 71.9
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 9.8e-52 208.8 253 47.0
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.1e-50 203.4 126 77.8
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 2.5e-47 194.1 134 72.4
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.0e-44 184.5 265 46.8
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.5e-41 173.7 114 72.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 6.6e-40 169.5 143 62.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 8.9e-37 159.1 114 69.3
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.7e-35 153.7 94 75.5
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.7e-35 153.7 94 75.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 4.1e-34 150.2 163 48.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.1e-25 121.3 69 84.1
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 3.0e-24 117.5 63 88.9
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.9e-23 114.8 66 83.3
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 9.6e-23 112.5 91 65.9
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.6e-22 111.7 72 73.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.0e-21 107.1 65 83.1
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.6e-20 104.4 67 74.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.4e-20 104.0 65 80.0
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.9e-20 102.4 65 78.5
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.2e-19 101.3 102 56.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.8e-19 100.5 65 81.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.7e-17 94.4 77 67.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 5.6e-15 86.7 181 34.8
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 3.4e-12 77.4 48 66.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 9.3e-10 69.3 38 78.9
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 2.5e-07 61.2 36 80.6
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 7.4e-07 59.7 35 80.0
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 7.4e-07 59.7 35 80.0
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 2.8e-06 57.8 48 70.8


User provided reference genes

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