Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.1e-179 633.3 325 100.0
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.9e-160 569.3 326 90.8
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 6.2e-156 554.3 327 87.8
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 6.7e-150 534.3 323 85.8
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.9e-149 532.7 323 85.1
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 4.2e-144 515.0 325 83.4
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 7.2e-144 514.2 324 83.0
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 1.6e-143 513.1 325 83.1
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 1.6e-143 513.1 323 83.0
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 9.7e-133 477.2 325 77.5
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.2e-124 449.5 342 71.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 8.8e-118 427.6 323 70.6
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.5e-104 382.9 256 78.9
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 8.0e-103 377.9 298 65.4
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.0e-102 377.5 298 65.4
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.2e-100 369.8 298 64.8
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.1e-99 367.5 298 64.4
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.5e-96 357.1 290 63.8
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 9.5e-96 354.4 300 60.7
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.0e-94 350.9 286 61.9
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 1.0e-94 350.9 282 65.2
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.3e-94 349.7 238 79.0
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 6.8e-94 348.2 323 59.1
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.2e-93 347.4 287 62.7
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 4.4e-93 345.5 291 61.9
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 7.5e-93 344.7 293 62.8
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 9.8e-93 344.4 299 61.9
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.3e-92 344.0 300 59.3
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.2e-92 343.2 293 60.1
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 4.9e-92 342.0 294 61.9
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 8.3e-92 341.3 309 59.5
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 2.4e-91 339.7 297 60.9
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 2.4e-91 339.7 300 61.0
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 9.2e-91 337.8 285 60.4
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 7.8e-90 334.7 310 59.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 5.0e-89 332.0 305 59.0
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 6.6e-89 331.6 284 61.3
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 8.6e-89 331.3 323 55.7
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 4.3e-88 328.9 312 58.0
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 7.3e-88 328.2 285 61.1
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.6e-87 327.0 288 60.4
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 3.6e-87 325.9 308 57.5
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 6.2e-87 325.1 276 60.9
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.2e-87 325.1 280 60.7
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.1e-86 324.3 293 57.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 1.1e-86 324.3 322 56.2
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.4e-86 323.9 286 59.4
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.1e-86 322.8 297 59.3
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.1e-86 322.8 297 59.3
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 3.1e-86 322.8 271 62.7
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-85 320.9 291 59.5
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.5e-85 320.5 269 63.6
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.6e-85 319.7 270 60.7
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 5.8e-85 318.5 305 57.0
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.9e-83 313.5 291 56.7
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 3.2e-83 312.8 304 56.6
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 4.1e-83 312.4 291 56.4
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.1e-82 310.1 284 57.4
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 3.5e-82 309.3 277 59.6
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 7.8e-82 308.1 292 56.2
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.7e-81 307.0 323 53.9
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 3.0e-81 306.2 336 53.9
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 5.1e-81 305.4 309 55.3
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.1e-80 304.3 293 53.2
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.5e-80 303.9 325 52.6
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.5e-80 303.9 293 54.6
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 7.3e-80 301.6 272 59.2
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.1e-78 297.7 287 56.1
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.8e-78 297.0 318 53.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 3.1e-78 296.2 268 60.1
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.3e-76 290.8 277 56.7
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.9e-75 287.0 311 55.6
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 4.1e-75 285.8 342 48.8
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 1.2e-74 284.3 266 57.5
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.7e-73 280.4 304 53.6
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 5.6e-72 275.4 281 53.7
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.1e-71 273.5 250 58.8
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-71 273.1 332 49.4
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 4.7e-71 272.3 297 53.2
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.4e-70 270.8 315 48.3
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.4e-70 270.0 291 54.0
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 1.1e-67 261.2 299 50.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.4e-67 260.8 294 48.6
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.9e-67 260.4 299 52.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 1.9e-67 260.4 169 79.9
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 4.2e-67 259.2 293 48.5
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 2.7e-66 256.5 311 46.9
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.1e-64 251.1 281 49.5
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 3.1e-62 243.0 291 45.0
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.9e-62 241.9 208 61.1
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 9.0e-62 241.5 402 39.1
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 6.4e-60 235.3 268 48.9
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 4.6e-58 229.2 151 75.5
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 1.5e-56 224.2 155 72.3
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.1e-55 220.3 271 48.3
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.4e-54 216.9 278 46.8
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 9.9e-53 211.5 131 77.1
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.3e-52 211.1 200 55.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 9.3e-51 204.9 283 40.6
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.6e-50 204.1 150 68.0
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 3.5e-50 203.0 322 39.8
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 6.5e-44 182.2 229 48.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.9e-41 172.9 281 40.2
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.9e-40 170.6 267 41.6
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 5.7e-40 169.1 271 39.5
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.7e-39 166.4 98 78.6
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 8.2e-39 165.2 89 89.9
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 5.9e-37 159.1 280 36.1
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.2e-36 157.1 215 42.8
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.2e-35 153.3 98 72.4
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 4.2e-35 152.9 183 44.3
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 7.9e-34 148.7 131 58.8
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.2e-31 140.6 144 52.8
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 5.3e-30 136.0 174 47.7
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.2e-29 134.8 81 75.3
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 3.8e-28 129.8 106 60.4
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 3.8e-28 129.8 163 49.1
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 5.5e-27 125.9 176 44.9
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.6e-18 96.7 151 42.4
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-17 95.1 72 63.9
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.4e-17 94.7 89 56.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-15 87.0 82 57.3
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 6.5e-12 75.9 54 64.8
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 2.7e-10 70.5 67 55.2
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 4.7e-10 69.7 65 56.9
C03p46250 Brassica napus HOM05D020391 ORTHO05D033527 1.0e-09 68.6 39 89.7
BolC8t50118H Brassica oleracea HOM05D020391 ORTHO05D033527 1.0e-09 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 5.2e-09 66.2 49 63.3
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 5.2e-09 66.2 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.5e-08 64.7 160 28.8
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 4.4e-08 63.2 55 65.5
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 4.4e-08 63.2 98 43.9
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 1.3e-07 61.6 63 52.4
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 2.2e-07 60.8 88 34.1
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 6.3e-07 59.3 77 41.6
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 3.1e-06 57.0 42 66.7
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 4.1e-06 56.6 53 45.3


User provided reference genes

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