Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 2.2e-41 171.8 81 100.0
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 5.4e-40 167.2 81 97.5
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 1.2e-39 166.0 81 96.3
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 1.7e-38 162.2 81 93.8
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 5.0e-38 160.6 81 92.6
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 4.4e-34 147.5 82 87.8
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 4.4e-34 147.5 82 87.8
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 4.4e-34 147.5 82 87.8
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.3e-33 146.0 82 87.8
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 2.8e-33 144.8 82 86.6
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 2.4e-32 141.7 82 85.4
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 3.6e-28 127.9 81 74.1
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 6.8e-27 123.6 81 74.1
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 9.8e-26 119.8 81 70.4
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 1.7e-25 119.0 81 70.4
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 1.7e-25 119.0 81 69.1
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 72.8
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.9e-25 117.5 81 67.9
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 6.4e-25 117.1 82 68.3
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 6.4e-25 117.1 81 69.1
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.1e-24 116.3 81 69.1
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 1.1e-24 116.3 82 69.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.1e-24 116.3 81 70.4
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.1e-24 116.3 80 67.5
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 1.4e-24 115.9 81 67.9
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.4e-24 115.9 81 70.4
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.4e-24 115.9 81 66.7
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.4e-24 115.2 81 67.9
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 9.2e-24 113.2 81 67.9
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 67.9
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 65.4
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 66.7
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 3.5e-23 111.3 84 65.5
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 3.5e-23 111.3 81 65.4
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.6e-23 110.9 81 64.2
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 4.6e-23 110.9 81 65.4
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 4.6e-23 110.9 81 65.4
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 7.8e-23 110.2 81 66.7
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 1.0e-22 109.8 84 66.7
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 1.0e-22 109.8 84 66.7
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 1.3e-22 109.4 81 66.7
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 1.3e-22 109.4 81 65.4
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.3e-22 109.4 87 60.9
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.7e-22 109.0 81 64.2
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 3.0e-22 108.2 81 60.5
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 3.0e-22 108.2 73 67.1
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 3.9e-22 107.8 81 60.5
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 3.9e-22 107.8 82 61.0
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 3.9e-22 107.8 81 64.2
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 5.0e-22 107.5 81 65.4
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 6.6e-22 107.1 84 66.7
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 1.1e-21 106.3 81 60.5
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 1.5e-21 105.9 81 63.0
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 2.5e-21 105.1 84 59.5
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 2.5e-21 105.1 82 62.2
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 2.5e-21 105.1 82 62.2
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.5e-21 105.1 81 63.0
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 2.5e-21 105.1 82 61.0
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.5e-21 105.1 89 59.6
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 3.3e-21 104.8 81 61.7
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 3.3e-21 104.8 81 60.5
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 4.3e-21 104.4 86 60.5
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 5.6e-21 104.0 87 56.3
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 7.3e-21 103.6 86 57.0
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 9.5e-21 103.2 81 61.7
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 9.5e-21 103.2 87 57.5
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 1.2e-20 102.8 73 67.1
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 1.6e-20 102.4 68 69.1
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 1.6e-20 102.4 87 58.6
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 1.6e-20 102.4 87 58.6
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 1.6e-20 102.4 87 58.6
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 2.1e-20 102.1 76 63.2
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 2.8e-20 101.7 81 61.7
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 3.6e-20 101.3 81 60.5
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 3.6e-20 101.3 79 58.2
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 4.7e-20 100.9 88 56.8
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 6.2e-20 100.5 82 61.0
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 8.0e-20 100.1 86 58.1
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 8.0e-20 100.1 86 58.1
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 8.0e-20 100.1 86 58.1
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 2.3e-19 98.6 81 61.7
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.3e-19 98.6 81 60.5
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 5.2e-19 97.4 74 60.8
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 2.6e-18 95.1 81 53.1
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 3.7e-17 91.3 81 55.6
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 3.2e-16 88.2 81 50.6
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 2.0e-15 85.5 67 59.7
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 2.0e-15 85.5 82 50.0
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.3e-06 55.5 40 55.0


User provided reference genes

Program Settings