Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 9.4e-132 473.8 284 100.0
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 4.4e-121 438.3 285 93.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 3.2e-116 422.2 287 90.6
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.6e-115 419.9 284 76.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.1e-111 407.1 284 79.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.5e-108 396.0 286 73.1
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 4.7e-99 365.2 285 70.2
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.2e-97 360.5 285 69.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.2e-97 360.5 285 69.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.2e-97 360.5 285 69.5
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 3.4e-97 359.0 292 74.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-96 357.1 285 69.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 9.2e-95 350.9 277 69.3
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.9e-74 281.2 279 71.3
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.2e-72 276.6 297 63.6
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 6.6e-61 238.4 294 49.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.6e-59 232.6 293 47.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.5e-57 227.3 293 46.8
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.6e-54 215.7 294 46.9
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 8.7e-53 211.5 292 44.9
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.1e-52 211.1 292 44.2
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.3e-52 209.1 292 44.5
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 4.3e-52 209.1 295 48.8
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 9.6e-52 208.0 295 49.5
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 9.6e-52 208.0 295 49.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.6e-49 199.9 297 41.4
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.6e-49 199.9 294 44.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.7e-48 197.2 328 40.2
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 5.5e-47 192.2 294 42.2
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 9.3e-47 191.4 300 43.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.6e-46 190.7 300 40.3
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 6.0e-46 188.7 299 40.1
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 7.9e-46 188.3 292 44.5
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.0e-45 188.0 295 43.1
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-45 188.0 305 44.9
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.3e-45 186.8 292 46.2
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.1e-44 184.5 267 44.2
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.9e-44 183.7 269 43.9
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.3e-44 183.0 296 40.9
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.3e-43 181.0 258 47.7
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.8e-43 179.9 296 39.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.8e-43 179.1 293 39.2
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.8e-43 179.1 294 40.1
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.1e-42 177.9 297 45.1
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.1e-42 177.9 270 43.7
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.8e-42 177.2 294 40.5
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.4e-42 176.8 269 40.1
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.4e-42 176.8 295 46.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 3.1e-42 176.4 304 38.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.0e-42 176.0 269 42.8
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 6.9e-42 175.3 294 45.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.2e-41 174.5 297 38.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.2e-39 166.4 294 38.1
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.2e-39 166.0 295 44.1
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 7.1e-39 165.2 295 39.0
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.6e-38 162.5 212 46.7
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 4.6e-38 162.5 301 37.9
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 3.9e-37 159.5 298 37.2
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 5.1e-37 159.1 291 38.1
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.5e-36 156.8 324 35.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.5e-36 156.8 324 35.8
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 5.7e-36 155.6 295 37.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.1e-34 149.4 297 37.7
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.1e-34 149.4 213 44.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 5.3e-34 149.1 158 51.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.4e-33 146.4 344 34.6
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 7.6e-33 145.2 297 40.4
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.0e-32 142.5 392 30.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.5e-32 142.1 269 38.3
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 6.5e-32 142.1 295 33.6
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-31 141.0 393 30.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.1e-30 137.1 282 34.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.7e-30 136.7 241 38.6
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.1e-30 135.6 295 34.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-29 134.4 295 33.9
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.9e-29 132.9 294 33.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.5e-28 131.0 261 34.1
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 5.7e-28 129.0 298 32.9
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.6e-27 127.5 285 32.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.6e-27 127.5 252 36.1
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.8e-27 126.7 288 33.3
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.8e-27 126.7 252 36.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 8.2e-27 125.2 298 32.6
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 8.2e-27 125.2 246 35.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.4e-26 123.6 287 34.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 6.9e-26 122.1 213 39.0
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.5e-25 120.9 232 34.5
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-25 120.6 81 79.0
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.4e-25 119.8 287 34.1
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.2e-24 117.1 219 36.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 8.5e-24 115.2 258 35.7
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.5e-23 113.6 295 31.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.2e-22 111.3 217 35.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.1e-22 110.5 268 32.5
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 3.6e-22 109.8 290 31.4
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 6.1e-22 109.0 147 42.2
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 5.1e-21 105.9 300 27.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 5.1e-21 105.9 299 29.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 6.7e-21 105.5 250 36.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.5e-20 104.4 247 32.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.7e-20 102.4 296 30.7
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.7e-19 100.9 262 32.1
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.7e-19 100.9 317 26.5
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.7e-19 99.8 291 27.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-18 97.8 240 32.1
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 5.9e-17 92.4 330 28.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 7.7e-17 92.0 303 27.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.7e-16 90.9 262 29.8
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.7e-16 90.9 331 28.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.4e-15 87.8 263 28.1
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.4e-15 87.8 311 27.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.2e-15 86.7 285 33.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 5.5e-15 85.9 360 25.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 9.4e-15 85.1 165 36.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.6e-14 84.3 233 27.9
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 7.9e-14 82.0 222 27.0
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.0e-13 80.1 322 28.0
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.9e-13 79.7 227 31.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.9e-13 79.7 196 33.7
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 8.8e-13 78.6 321 28.3
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.1e-12 78.2 87 54.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.4e-12 76.3 90 45.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.4e-12 76.3 102 40.2
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.4e-12 75.5 118 42.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.7e-11 73.2 173 30.1
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-10 70.1 41 82.9
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 7.0e-10 68.9 233 29.2
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 9.1e-10 68.6 175 33.1
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.7e-09 65.5 277 26.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.7e-08 64.3 85 42.4
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.2e-08 63.9 74 41.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.9e-07 60.8 98 35.7
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 1.9e-07 60.8 82 41.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.2e-07 58.9 74 40.5
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-06 58.2 102 34.3
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.7e-06 57.0 169 30.8
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.6e-06 56.6 93 36.6


User provided reference genes

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