Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.5e-119 433.0 226 100.0
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.2e-118 429.9 226 99.1
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.1e-118 429.1 226 99.1
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.0e-117 424.9 226 98.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.2e-115 419.1 227 96.5
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.2e-115 419.1 226 96.9
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 2.8e-115 418.7 226 96.5
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.9
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.9
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.4e-114 416.4 227 96.0
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.4e-114 416.4 226 96.9
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-114 416.0 226 96.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.4e-114 415.6 226 96.5
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 5.4e-114 414.5 226 96.0
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-113 413.3 227 96.9
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 2.0e-113 412.5 227 94.7
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 2.0e-113 412.5 227 94.7
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.9e-111 406.0 226 94.7
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.8e-108 394.4 226 90.7
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.8e-108 393.7 229 90.4
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.3e-107 393.3 229 89.5
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.7e-107 392.9 229 90.0
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 2.2e-107 392.5 227 91.2
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 8.3e-107 390.6 226 90.3
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.9e-106 389.4 226 89.8
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 3.2e-106 388.7 227 89.9
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 5.4e-106 387.9 228 88.2
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.6e-105 386.3 230 88.3
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.6e-105 386.3 226 88.9
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 2.0e-105 386.0 228 89.5
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 2.0e-105 386.0 234 86.3
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 2.7e-105 385.6 224 89.7
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.7e-105 385.6 227 89.4
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.6e-105 384.8 227 89.0
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.6e-105 384.8 228 89.5
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.6e-105 384.8 228 89.5
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 4.6e-105 384.8 227 89.0
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 6.0e-105 384.4 230 88.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 7.8e-105 384.0 224 89.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.0e-104 383.6 226 89.4
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.0e-104 383.6 230 88.3
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.3e-104 382.5 234 85.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.3e-104 382.5 227 89.4
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.3e-104 382.5 227 89.0
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 2.3e-104 382.5 230 88.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 3.0e-104 382.1 209 94.7
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.9e-104 381.7 227 89.4
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 86.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 5.0e-104 381.3 230 88.3
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 6.6e-104 380.9 231 86.6
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 6.6e-104 380.9 232 86.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 6.6e-104 380.9 232 86.2
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 8.6e-104 380.6 224 88.8
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 8.6e-104 380.6 224 88.8
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.1e-103 380.2 227 88.1
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.0
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 1.5e-103 379.8 214 91.1
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.9e-103 379.4 229 87.8
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 2.5e-103 379.0 222 88.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.3e-103 378.6 256 80.5
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 3.3e-103 378.6 229 86.5
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 3.3e-103 378.6 231 86.6
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 4.3e-103 378.3 231 85.7
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 4.3e-103 378.3 226 87.2
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 7.3e-103 377.5 231 85.7
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 7.3e-103 377.5 231 87.4
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.2e-102 376.7 222 88.3
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.6e-102 376.3 225 87.1
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.6e-102 376.3 227 87.7
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.6e-102 376.3 227 88.5
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 1.6e-102 376.3 227 86.8
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 2.1e-102 375.9 231 85.3
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.8e-102 375.6 224 88.4
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 2.8e-102 375.6 226 88.5
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.8e-102 375.6 228 87.3
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.8e-102 375.6 223 88.3
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 2.8e-102 375.6 225 86.7
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 3.6e-102 375.2 231 86.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.6e-102 375.2 227 85.9
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 3.6e-102 375.2 223 88.3
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.6e-102 375.2 235 84.7
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 4.7e-102 374.8 227 85.5
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 4.7e-102 374.8 224 89.3
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 6.2e-102 374.4 224 87.9
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 6.2e-102 374.4 233 85.8
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 8.1e-102 374.0 230 87.0
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 8.1e-102 374.0 233 85.0
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 8.1e-102 374.0 227 87.2
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.4e-101 373.2 225 87.6
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.8e-101 372.9 227 87.7
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 5.2e-101 371.3 232 84.5
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 5.2e-101 371.3 227 85.9
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 6.8e-101 370.9 231 85.3
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 6.8e-101 370.9 231 86.6
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.2e-100 370.2 231 84.4
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.5e-100 369.8 232 84.9
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.6e-100 369.0 231 85.7
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 3.4e-100 368.6 225 85.3
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.7e-99 366.3 206 92.2
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.7e-99 366.3 208 91.8
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 4.1e-98 361.7 203 91.6
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 5.4e-98 361.3 231 82.7
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.4e-98 361.3 224 82.6
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 7.1e-98 360.9 229 83.0
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.6e-97 359.8 215 87.0
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.6e-97 359.8 207 91.8
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 2.1e-97 359.4 224 82.1
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.7e-97 359.0 225 84.9
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 7.8e-97 357.5 226 83.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 4.3e-95 351.7 221 81.0
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 9.5e-95 350.5 228 82.0
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 9.9e-92 340.5 300 65.0
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.6e-89 333.2 233 78.1
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.7e-88 329.7 192 90.1
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 3.9e-88 328.6 214 79.9
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.4e-84 315.1 214 75.2
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 9.3e-82 307.4 211 75.8
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 4.8e-78 295.0 190 83.7
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 5.3e-77 291.6 194 83.0
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 5.3e-77 291.6 220 71.4
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.9e-75 285.8 179 86.6
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.1e-74 283.9 174 83.3
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.4e-74 283.5 162 91.4
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.9e-74 283.1 158 93.0
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.6e-73 280.0 158 93.7
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 6.0e-73 278.1 158 92.4
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 7.9e-73 277.7 192 80.2
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.6e-70 268.9 180 78.9
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 8.1e-70 267.7 170 84.1
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-69 266.9 186 76.3
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 2.0e-68 263.1 161 87.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 3.1e-61 239.2 160 78.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.4e-53 213.8 124 90.3
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 5.3e-53 211.8 175 70.3
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 7.7e-44 181.4 110 89.1
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 9.4e-42 174.5 103 89.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 2.3e-40 169.9 102 89.2
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.0e-35 152.1 158 56.3
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.6e-33 146.0 88 88.6
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.4e-29 134.0 79 83.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 4.7e-25 119.0 206 38.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 5.7e-23 112.1 78 76.9
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.2e-22 110.2 57 93.0
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 2.5e-18 96.7 63 77.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-17 92.4 66 71.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.9e-10 70.5 46 76.1


User provided reference genes

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