Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 2.3e-94 349.4 250 100.0
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 8.7e-81 304.3 220 95.5
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.2e-76 289.7 221 87.8
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 9.3e-75 284.3 234 83.8
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.8e-70 270.0 228 78.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 6.9e-70 268.1 212 78.8
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 5.5e-67 258.5 237 73.4
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.2e-60 236.5 226 73.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 7.1e-59 231.5 268 68.7
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-57 227.3 222 73.0
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.3e-57 227.3 222 74.3
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 7.4e-56 221.5 220 71.4
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 7.4e-56 221.5 220 71.4
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 6.9e-54 214.9 204 69.6
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-52 210.7 204 69.1
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.6e-50 202.6 243 53.5
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-49 200.7 112 81.2
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.0e-45 186.8 141 69.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.9e-44 183.0 121 76.9
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.2e-43 179.5 111 73.0
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.1e-42 176.8 233 51.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.7e-42 176.4 111 71.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.0e-41 174.5 112 71.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.8e-41 173.7 111 68.5
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.8e-41 173.7 111 73.0
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.9e-41 172.6 111 70.3
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 6.7e-41 171.8 111 73.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 4.4e-40 169.1 110 68.2
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.7e-40 168.7 104 74.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.7e-40 168.7 104 74.0
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 8.2e-39 164.9 115 67.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-38 164.5 111 69.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.1e-38 164.5 112 70.5
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 3.1e-38 162.9 112 69.6
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.2e-37 161.0 109 65.1
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 3.4e-37 159.5 237 47.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 3.4e-37 159.5 114 68.4
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.5e-37 159.1 110 69.1
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 7.7e-37 158.3 108 68.5
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.2e-36 156.8 88 85.2
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.2e-36 156.8 112 67.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 5.0e-36 155.6 113 65.5
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.5e-36 155.2 219 47.9
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 8.5e-36 154.8 113 68.1
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 8.5e-36 154.8 111 67.6
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.4e-35 154.1 93 74.2
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.2e-35 152.5 110 68.2
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 7.2e-35 151.8 108 66.7
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 7.2e-35 151.8 93 72.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.4e-35 151.4 110 65.5
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.4e-35 151.4 110 65.5
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.2e-34 151.0 113 64.6
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-34 151.0 233 47.6
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.6e-34 150.6 112 64.3
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.1e-34 150.2 110 65.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.1e-34 150.2 111 66.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.1e-34 148.7 82 80.5
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 7.9e-34 148.3 111 60.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.9e-34 148.3 112 63.4
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-33 147.5 228 53.9
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-33 147.5 112 63.4
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.4e-33 147.5 109 67.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.8e-33 147.1 111 64.9
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 3.9e-33 146.0 109 67.0
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-32 144.4 90 71.1
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.5e-32 144.1 113 61.1
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 4.4e-32 142.5 92 71.7
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.4e-32 142.5 82 75.6
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 5.7e-32 142.1 82 78.0
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.2e-31 140.2 105 63.8
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.7e-31 139.4 81 76.5
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 3.7e-31 139.4 111 63.1
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.8e-31 139.0 100 63.0
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 8.2e-31 138.3 110 60.9
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 8.2e-31 138.3 86 72.1
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.1e-30 137.9 220 47.7
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.4e-30 137.5 110 60.9
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.3e-30 135.6 101 66.3
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 5.3e-30 135.6 80 72.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 7.0e-30 135.2 90 68.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 7.0e-30 135.2 80 71.2
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 7.0e-30 135.2 114 61.4
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.6e-29 133.3 110 60.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.5e-29 132.9 111 61.3
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 3.5e-29 132.9 110 58.2
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 5.9e-29 132.1 81 75.3
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.0e-28 131.3 114 58.8
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 3.8e-28 129.4 244 38.1
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 3.8e-28 129.4 221 39.4
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 5.0e-28 129.0 102 61.8
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 6.5e-28 128.6 111 55.9
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 8.5e-28 128.3 216 42.6
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 8.5e-28 128.3 81 72.8
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.9e-27 127.1 103 62.1
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.1e-26 123.6 109 57.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 5.2e-25 119.0 61 91.8
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.2e-24 117.9 78 70.5
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.6e-24 116.7 78 69.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 9.7e-24 114.8 67 79.1
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.3e-23 114.4 63 77.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.7e-23 114.0 109 50.5
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.2e-23 113.6 80 61.2
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.8e-23 113.2 73 72.6
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 8.2e-23 111.7 111 55.9
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 8.2e-23 111.7 116 49.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.1e-22 111.3 65 76.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-22 111.3 111 51.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.5e-21 106.3 65 75.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 4.5e-21 105.9 65 73.8
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 4.5e-21 105.9 101 51.5
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.9e-20 103.2 138 41.3
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 5.0e-20 102.4 68 70.6
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.0e-20 102.4 82 57.3
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 2.5e-19 100.1 109 47.7
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.2e-19 99.8 97 58.8
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.4e-19 98.2 119 47.1
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 9.4e-19 98.2 93 54.8
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.6e-18 96.3 78 55.1
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.6e-18 96.3 87 52.9
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.6e-18 96.3 87 52.9
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 4.7e-18 95.9 142 60.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.0e-18 95.1 55 76.4
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.0e-17 94.7 114 45.6
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.0e-17 94.7 95 52.6
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 1.8e-17 94.0 109 47.7
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.0e-16 90.5 109 47.7
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.5e-16 88.6 51 78.4
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.3e-15 87.8 221 39.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.2e-15 87.0 55 70.9
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 5.4e-14 82.4 51 72.5
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.4e-14 82.4 57 66.7
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 5.4e-14 82.4 118 44.9
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 9.1e-14 81.6 80 56.2
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.6e-13 80.9 53 69.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 2.0e-13 80.5 65 60.0
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.0e-13 80.5 81 48.1
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 5.9e-13 79.0 131 40.5
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.0e-12 78.2 109 41.3
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.0e-12 78.2 49 73.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.3e-12 77.8 70 44.3
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.3e-12 77.0 113 39.8
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.9e-12 76.6 126 38.9
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 5.0e-12 75.9 147 34.7
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 6.5e-12 75.5 62 56.5
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 8.6e-12 75.1 125 40.0
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.5e-11 74.3 121 39.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 9.5e-11 71.6 65 53.8
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.6e-10 70.9 81 45.7
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.8e-10 70.1 61 52.5
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 3.6e-10 69.7 61 55.7
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 8.0e-10 68.6 120 40.8
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.4e-09 67.8 57 61.4
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.3e-09 67.0 33 93.9
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 4.0e-09 66.2 61 50.8
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 6.8e-09 65.5 33 90.9
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 8.8e-09 65.1 34 88.2
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 8.8e-09 65.1 33 87.9
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 8.8e-09 65.1 92 37.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.2e-08 64.7 35 82.9
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.2e-08 64.7 33 87.9
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.5e-08 64.3 51 60.8
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-08 64.3 33 87.9
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.0e-08 63.9 33 87.9
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.0e-08 63.9 33 87.9
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 3.4e-08 63.2 47 61.7
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.4e-08 62.8 33 87.9
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 4.4e-08 62.8 44 65.9
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 5.7e-08 62.4 33 84.8
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 8.3e-07 58.5 35 74.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.4e-06 57.8 58 53.4


User provided reference genes

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