Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 5.2e-116 421.0 205 100.0
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 6.2e-109 397.5 200 96.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 8.9e-108 393.7 205 94.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 9.6e-94 347.1 208 83.2
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.8e-93 345.5 208 82.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-93 345.5 208 82.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.8e-93 345.5 208 82.7
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 8.9e-92 340.5 208 83.7
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 7.6e-91 337.4 208 82.7
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.2e-90 335.9 209 80.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.2e-90 335.9 222 77.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-89 333.6 208 81.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.9e-89 332.8 190 85.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.7e-88 328.9 219 78.5
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-87 327.0 230 75.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.3e-87 326.6 214 78.5
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 5.6e-78 294.7 207 73.9
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 9.6e-78 293.9 202 73.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.8e-77 291.6 216 69.4
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.6e-72 275.0 211 67.8
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 9.6e-70 267.3 228 62.3
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.7e-69 265.4 229 61.1
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.1e-68 263.8 222 60.8
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.5e-67 260.0 227 59.5
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.8e-66 255.4 223 59.6
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 6.5e-66 254.6 226 58.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-65 253.8 211 63.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.1e-65 253.8 220 59.5
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.1e-65 253.8 227 59.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.4e-65 253.4 218 59.2
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.2e-65 252.3 211 62.1
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.2e-65 251.9 229 58.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.2e-65 251.9 211 63.0
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.2e-65 251.9 229 58.5
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 5.5e-65 251.5 223 59.2
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 5.5e-65 251.5 223 57.4
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.5e-65 251.5 226 58.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 7.1e-65 251.1 227 59.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.1e-65 251.1 228 58.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 9.3e-65 250.8 227 60.4
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.2e-64 250.4 223 60.5
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.2e-64 250.4 228 58.3
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.6e-64 250.0 223 60.5
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.1e-64 249.6 230 57.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.1e-64 249.6 213 60.1
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.7e-64 249.2 224 57.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.7e-64 249.2 227 59.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 3.5e-64 248.8 217 60.4
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-64 248.8 198 69.2
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.5e-64 248.8 214 59.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.3e-63 246.9 221 57.5
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.3e-63 246.1 226 57.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 6.7e-63 244.6 211 60.2
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 6.7e-63 244.6 210 61.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 8.7e-63 244.2 228 57.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.9e-62 243.0 236 55.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.5e-62 242.7 224 56.7
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 3.3e-62 242.3 214 64.5
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 3.3e-62 242.3 214 64.5
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.3e-62 242.3 224 55.8
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.3e-62 241.9 227 57.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.4e-62 241.1 222 55.9
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 7.4e-62 241.1 225 55.1
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 7.4e-62 241.1 203 61.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 9.6e-62 240.7 222 59.0
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 9.6e-62 240.7 215 58.1
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.6e-61 240.0 221 57.0
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.6e-61 240.0 222 55.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.6e-61 240.0 222 55.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.6e-61 240.0 224 57.1
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.1e-61 239.6 208 65.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.8e-61 239.2 223 54.7
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.8e-61 239.2 216 56.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 3.7e-61 238.8 219 56.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.7e-61 238.8 222 54.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 3.7e-61 238.8 226 58.0
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.8e-61 238.4 211 55.9
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.8e-61 238.4 226 59.3
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 6.3e-61 238.0 220 56.8
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.2e-61 237.7 222 54.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 8.2e-61 237.7 215 55.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-60 236.9 222 54.5
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.4e-60 236.1 211 55.9
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 4.1e-60 235.3 211 58.3
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 5.3e-60 235.0 213 59.2
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 5.3e-60 235.0 224 55.4
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.9e-60 234.6 211 59.7
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.0e-60 234.2 213 59.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.0e-59 233.0 219 57.5
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.0e-59 233.0 226 57.5
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.6e-59 232.6 224 55.4
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 4.5e-59 231.9 203 59.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.9e-59 231.5 214 58.4
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.3e-58 230.3 232 55.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.7e-58 229.9 231 53.2
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.2e-58 229.6 224 54.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.2e-58 229.6 217 56.2
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.8e-58 228.8 215 55.3
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.8e-58 228.8 208 55.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.0e-58 228.4 221 55.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.0e-58 228.4 208 54.8
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.5e-58 228.0 215 55.3
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 6.5e-58 228.0 218 56.0
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 8.5e-58 227.6 215 54.9
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.9e-57 226.5 218 55.5
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 2.5e-57 226.1 208 54.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.2e-57 225.7 222 53.6
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 5.5e-57 224.9 219 54.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 7.2e-57 224.6 202 57.4
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 9.3e-57 224.2 224 53.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.2e-56 223.8 208 53.8
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.7e-56 222.6 210 57.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 6.1e-56 221.5 198 60.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 7.9e-56 221.1 221 54.3
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.3e-55 220.3 147 73.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.8e-55 219.9 204 56.4
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.3e-55 219.5 207 54.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 8.7e-55 217.6 220 54.1
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 8.7e-55 217.6 201 57.2
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 8.7e-55 217.6 201 57.2
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-54 217.2 203 54.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 5.7e-54 214.9 203 57.6
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 7.4e-54 214.5 217 51.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.4e-54 214.5 169 63.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.8e-53 211.8 227 52.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.8e-53 211.8 224 50.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.3e-53 211.5 151 66.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.1e-52 210.7 203 54.2
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.1e-52 210.7 244 51.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.4e-52 210.3 157 65.0
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.0e-50 204.1 215 53.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.7e-50 203.4 131 71.0
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.9e-50 202.6 209 53.6
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.9e-50 202.6 211 51.7
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 5.0e-50 201.8 207 54.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.4e-49 200.3 243 48.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.4e-49 200.3 198 51.5
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.2e-49 198.7 176 58.5
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 5.5e-49 198.4 214 48.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.7e-48 196.1 192 52.1
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 7.9e-48 194.5 172 58.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.9e-48 194.5 144 60.4
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 7.9e-48 194.5 196 54.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.8e-47 193.4 218 49.5
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.3e-47 193.0 219 49.3
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 5.1e-47 191.8 164 58.5
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 8.8e-47 191.0 220 49.5
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.5e-46 190.3 225 48.0
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.0e-46 189.9 218 47.7
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.4e-46 188.7 218 47.2
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.7e-46 187.6 220 47.3
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.7e-45 186.8 224 47.8
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 3.7e-45 185.7 225 47.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.1e-44 184.1 132 64.4
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.1e-44 184.1 132 64.4
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.0e-43 179.9 182 50.0
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 3.4e-43 179.1 206 50.0
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.4e-41 173.7 189 51.9
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.5e-41 172.9 128 60.9
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.2e-41 171.4 176 48.3
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.3e-39 166.4 144 52.1
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.3e-39 166.4 123 61.0
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.7e-39 164.9 151 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.0e-38 163.3 225 41.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.3e-38 162.5 217 44.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.4e-38 162.2 209 44.5
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.2e-37 159.8 216 47.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 8.2e-37 157.9 134 59.0
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.0e-35 153.3 125 55.2
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.3e-34 150.6 149 55.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.1e-33 147.5 142 47.2
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.5e-33 147.1 263 37.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.9e-33 146.7 216 44.4
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.3e-30 136.0 89 66.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.7e-29 132.5 88 68.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 6.5e-26 121.7 63 93.7
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.8e-21 105.5 52 94.2
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.3e-21 105.1 54 92.6
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.0e-06 57.0 111 42.3


User provided reference genes

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