Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 9.4e-91 337.4 254 100.0
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.3e-81 306.2 255 88.6
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 9.1e-78 294.3 259 88.4
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.2e-72 277.3 254 79.5
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 9.8e-72 274.2 256 87.5
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.3e-71 273.9 256 87.1
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 6.6e-60 235.0 255 70.2
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.7e-58 228.8 254 64.6
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 8.0e-58 228.0 252 71.0
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.8e-57 226.9 250 64.0
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.2e-55 219.9 250 64.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.4e-54 216.5 262 70.2
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.3e-52 210.7 266 72.9
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.3e-52 210.7 266 72.9
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.7e-52 210.3 268 72.8
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-52 210.3 268 72.8
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 8.6e-52 208.0 248 61.7
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-51 207.6 260 77.7
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.0e-50 201.4 256 55.1
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 7.5e-48 194.9 256 59.8
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 1.9e-46 190.3 250 55.2
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.9e-44 182.6 252 67.5
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.1e-43 181.0 257 62.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.3e-43 179.5 253 53.4
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.6e-42 177.2 251 51.8
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 3.6e-42 176.0 250 52.0
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.7e-42 175.6 253 66.8
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 6.2e-42 175.3 250 52.8
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 6.2e-42 175.3 250 53.2
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 6.2e-42 175.3 250 53.2
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.8e-41 173.7 253 53.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 3.7e-39 166.0 253 50.6
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 7.8e-37 158.3 250 50.8
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 7.8e-37 158.3 250 52.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 3.0e-36 156.4 256 47.7
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.6e-34 150.6 152 72.4
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 3.6e-34 149.4 253 46.6
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.4e-33 147.5 258 49.2
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 4.0e-33 146.0 255 51.4
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 8.9e-33 144.8 259 49.4
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.2e-32 144.4 254 48.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.0e-32 143.7 255 46.3
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 2.0e-32 143.7 253 49.0
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 7.6e-32 141.7 253 47.4
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.7e-31 140.6 255 43.9
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 2.2e-31 140.2 271 45.4
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.9e-30 137.1 249 43.4
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.4e-30 136.7 251 43.0
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.4e-30 136.7 251 43.4
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 2.4e-30 136.7 256 54.7
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.4e-30 136.7 257 45.9
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.2e-30 136.3 255 44.7
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 4.1e-30 136.0 255 45.5
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 5.4e-30 135.6 243 43.6
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 5.4e-30 135.6 252 42.9
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 9.2e-30 134.8 254 46.1
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 2.1e-29 133.7 274 44.9
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 2.1e-29 133.7 255 46.7
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.1e-29 133.7 253 46.2
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.1e-29 133.7 248 47.6
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 6.0e-29 132.1 266 50.8
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 6.0e-29 132.1 255 40.4
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 7.8e-29 131.7 244 44.7
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.7e-28 130.6 253 48.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 3.0e-28 129.8 252 44.8
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 3.0e-28 129.8 260 45.0
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 3.9e-28 129.4 256 42.2
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 3.9e-28 129.4 250 49.6
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 3.9e-28 129.4 251 51.4
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 6.6e-28 128.6 254 43.7
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.5e-27 127.5 247 55.1
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.5e-27 126.7 248 46.4
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.5e-27 126.7 247 53.4
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 3.3e-27 126.3 253 45.1
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 3.3e-27 126.3 253 41.1
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 3.3e-27 126.3 252 42.9
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 4.3e-27 125.9 247 55.1
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 5.6e-27 125.6 252 36.9
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.2e-26 124.4 250 44.0
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.2e-26 124.4 262 42.4
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.2e-26 124.4 254 41.7
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.6e-26 124.0 259 41.7
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.6e-26 124.0 252 40.5
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.6e-26 124.0 262 42.0
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.8e-26 123.2 249 40.6
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.2e-26 122.1 256 43.0
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 6.2e-26 122.1 270 41.1
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.2e-26 122.1 256 41.0
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 2.4e-25 120.2 253 39.9
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.1e-25 119.8 253 39.5
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 3.1e-25 119.8 256 39.8
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 4.0e-25 119.4 281 48.0
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 4.0e-25 119.4 260 36.9
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 5.2e-25 119.0 250 43.6
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 5.2e-25 119.0 243 37.9
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 6.9e-25 118.6 256 43.4
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 2.0e-24 117.1 248 42.3
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.0e-24 117.1 250 47.2
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.0e-24 117.1 248 43.5
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 4.4e-24 115.9 248 43.5
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.8e-24 115.5 250 46.8
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 5.8e-24 115.5 264 41.3
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 7.6e-24 115.2 258 42.2
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.3e-23 114.4 248 46.0
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.7e-23 114.0 248 41.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.9e-23 113.2 258 41.1
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 3.8e-23 112.8 238 37.8
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 3.8e-23 112.8 189 46.6
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 6.4e-23 112.1 257 50.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.4e-23 111.7 244 42.6
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.9e-22 110.5 236 43.2
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.9e-22 110.5 254 39.0
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.9e-22 110.5 279 43.0
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 4.2e-22 109.4 252 41.7
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 4.2e-22 109.4 278 43.9
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.2e-21 107.8 269 39.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.6e-21 107.5 247 42.5
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 2.7e-21 106.7 244 38.5
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.7e-21 106.7 251 40.2
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 7.8e-21 105.1 258 39.5
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-20 104.8 243 35.8
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 5.1e-20 102.4 189 38.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 6.6e-20 102.1 245 39.2
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.1e-19 101.3 249 39.8
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 5.6e-19 99.0 215 43.7
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 9.6e-19 98.2 257 44.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.1e-18 95.1 244 42.6
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 8.1e-18 95.1 154 41.6
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.1e-14 82.0 213 39.9
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.6e-13 80.9 208 39.9
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.0e-12 78.2 191 39.3
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.3e-12 77.8 91 50.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 7.4e-11 72.0 91 47.3
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 9.6e-11 71.6 190 52.1
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 9.6e-11 71.6 241 29.9
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.6e-10 70.9 99 44.4
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.6e-08 63.5 148 32.4
BcaB01g04867 Brassica carinata HOM05D005221 ORTHO05D006355 1.3e-07 61.2 52 63.5
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 6.4e-07 58.9 243 29.2
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 8.4e-07 58.5 81 43.2
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 8.4e-07 58.5 115 42.6
THA.LOC104826982 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 3.2e-06 56.6 90 40.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 4.2e-06 56.2 157 31.2


User provided reference genes

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