Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G30480 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 4.5e-117 425.6 438 100.0
AT5G19090 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 3.6e-74 283.1 455 73.4
Carub.0006s1741 Capsella rubella HOM05D000520 ORTHO05D000399 2.7e-69 266.9 456 76.8
BcaC03g13633 Brassica carinata HOM05D000520 ORTHO05D000399 6.6e-60 235.7 449 69.3
C02p10270 Brassica napus HOM05D000520 ORTHO05D000399 6.6e-60 235.7 449 69.3
BolC2t06934H Brassica oleracea HOM05D000520 ORTHO05D000399 6.6e-60 235.7 449 69.3
A02p05190 Brassica napus HOM05D000520 ORTHO05D000399 3.1e-57 226.9 457 63.5
BraA02t05479Z Brassica rapa HOM05D000520 ORTHO05D000399 1.9e-54 217.6 453 64.2
CARHR193900 Cardamine hirsuta HOM05D000520 ORTHO05D000399 2.1e-53 214.2 453 63.6
BcaB05g23361 Brassica carinata HOM05D000520 ORTHO05D000399 3.0e-52 210.3 462 61.0
Thhalv10013101m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 3.4e-48 196.8 454 67.2
BcaC04g18611 Brassica carinata HOM05D000520 ORTHO05D000399 1.1e-43 181.8 451 64.5
Sp6g25290 Schrenkiella parvula HOM05D000520 ORTHO05D000399 9.6e-43 178.7 454 66.1
BcaB08g36614 Brassica carinata HOM05D000520 ORTHO05D000399 1.1e-41 175.3 448 69.0
C09p57300 Brassica napus HOM05D000520 ORTHO05D000399 1.0e-36 158.7 460 65.2
A10p20600 Brassica napus HOM05D000520 ORTHO05D000399 1.9e-35 154.5 455 64.0
BraA10t44122Z Brassica rapa HOM05D000520 ORTHO05D000399 1.9e-35 154.5 455 64.0
BolC9t58600H Brassica oleracea HOM05D000520 ORTHO05D000399 1.5e-32 144.8 453 63.4
Aa31LG11G10640 Aethionema arabicum HOM05D000520 ORTHO05D000399 1.0e-23 115.5 72 87.5
BolC5t34771H Brassica oleracea HOM05D000520 ORTHO05D000399 2.7e-21 107.5 437 46.5
A05p41870 Brassica napus HOM05D000520 ORTHO05D000399 6.1e-21 106.3 443 46.5
C05p61130 Brassica napus HOM05D000520 ORTHO05D000399 5.1e-20 103.2 437 48.3
AL3G16980 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 1.5e-19 101.7 435 47.1
CARHR080640 Cardamine hirsuta HOM05D000520 ORTHO05D000399 1.5e-19 101.7 437 48.7
FvH4_4g14520 Fragaria vesca HOM05D000520 ORTHO05D000399 8.2e-18 95.9 100 55.0
FAN12G0085 Fragaria x ananassa HOM05D000520 ORTHO05D000399 8.2e-18 95.9 100 55.0
BraA05t22906Z Brassica rapa HOM05D000520 ORTHO05D000399 1.8e-17 94.7 447 44.3
MD16G1184300 Malus domestica HOM05D000520 ORTHO05D000399 4.1e-17 93.6 99 54.5
BcaC01g04326 Brassica carinata HOM05D000520 ORTHO05D000399 6.9e-17 92.8 76 69.7
C03p42000 Brassica napus HOM05D000520 ORTHO05D000399 6.9e-17 92.8 76 69.7
BolC3t16481H Brassica oleracea HOM05D000520 ORTHO05D000399 6.9e-17 92.8 76 69.7
THA.LOC104822309 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 6.9e-17 92.8 75 74.7
PGR004G1850 Punica granatum HOM05D000520 ORTHO05D000399 3.4e-16 90.5 100 72.0
Sabra08G0158700 Salix brachista HOM05D000520 ORTHO05D000399 3.4e-16 90.5 99 64.6
AT3G06130 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 5.9e-16 89.7 440 46.4
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 5.9e-16 89.7 99 55.6
A03p34530 Brassica napus HOM05D000520 ORTHO05D000399 7.7e-16 89.4 423 49.6
BraA03t12630Z Brassica rapa HOM05D000520 ORTHO05D000399 7.7e-16 89.4 76 67.1
FAN22G0660 Fragaria x ananassa HOM05D000520 ORTHO05D000399 2.9e-15 87.4 100 53.0
Sp3g05080 Schrenkiella parvula HOM05D000520 ORTHO05D000399 3.8e-15 87.0 435 52.0
CiPaw.02G092700 Carya illinoinensis HOM05D000520 ORTHO05D000399 5.0e-15 86.7 100 57.0
Manes.15G023400 Manihot esculenta HOM05D000520 ORTHO05D000399 8.5e-15 85.9 99 65.7
Manes.03G184400 Manihot esculenta HOM05D000520 ORTHO05D000399 1.1e-14 85.5 99 62.6
Oeu042784.1 Olea europaea HOM05D000520 ORTHO05D000399 4.2e-14 83.6 99 53.5
Carub.0003s0556 Capsella rubella HOM05D000520 ORTHO05D000399 5.5e-14 83.2 440 45.5
RcHm_v2.0_Chr4g0418311 Rosa chinensis HOM05D000520 ORTHO05D000399 7.2e-14 82.8 101 49.5
THA.LOC104802746 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 9.4e-14 82.4 98 58.2
DCAR_027154 Daucus carota HOM05D000520 ORTHO05D000399 1.2e-13 82.0 99 53.5
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 1.6e-13 81.6 107 66.4
TAR636G3323 Trochodendron aralioides HOM05D000520 ORTHO05D000399 2.1e-13 81.3 99 51.5
MSTRG.24755 Avicennia marina HOM05D000520 ORTHO05D000399 2.7e-13 80.9 101 50.5
Duzib212G0287 Durio zibethinus HOM05D000520 ORTHO05D000399 3.6e-13 80.5 100 55.0
Thhalv10020810m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 3.6e-13 80.5 74 70.3
FAN07G0772 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.6e-13 80.5 100 54.0
Glyma.07G257300 Glycine max HOM05D000520 ORTHO05D000399 3.6e-13 80.5 102 60.8
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 3.6e-13 80.5 72 63.9
Phvul.006G153400 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 3.6e-13 80.5 95 52.6
FAN17G1094 Fragaria x ananassa HOM05D000520 ORTHO05D000399 4.7e-13 80.1 100 54.0
Oeu030984.1 Olea europaea HOM05D000520 ORTHO05D000399 6.1e-13 79.7 97 51.5
Aa31LG5G16650 Aethionema arabicum HOM05D000520 ORTHO05D000399 7.9e-13 79.3 439 49.4
Hma1.2p1_1037F.1_g250580 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 7.9e-13 79.3 101 55.4
Lj3C779T2 Lonicera japonica HOM05D000520 ORTHO05D000399 1.0e-12 79.0 75 58.7
MSTRG.21833 Avicennia marina HOM05D000520 ORTHO05D000399 1.8e-12 78.2 95 53.7
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 1.8e-12 78.2 93 50.5
Cpa.g.sc16.22 Carica papaya HOM05D000520 ORTHO05D000399 2.3e-12 77.8 101 64.4
arahy.Tifrunner.gnm1.ann1.J3K1ST Arachis hypogaea HOM05D000520 ORTHO05D000399 3.9e-12 77.0 99 56.6
Sed0010325 Sechium edule HOM05D000520 ORTHO05D000399 3.9e-12 77.0 97 49.5
Lsat_1_v5_gn_5_76560 Lactuca sativa HOM05D000520 ORTHO05D000399 5.1e-12 76.6 71 60.6
Cfa015585 Carpinus fangiana HOM05D000520 ORTHO05D000399 6.7e-12 76.3 100 46.0
ECA240G2947 Erigeron canadensis HOM05D000520 ORTHO05D000399 6.7e-12 76.3 72 63.9
Glyma.17G016800 Glycine max HOM05D000520 ORTHO05D000399 6.7e-12 76.3 104 57.7
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 6.7e-12 76.3 94 47.9
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 8.8e-12 75.9 94 51.1
unitig_748.g8346 Utricularia gibba HOM05D000520 ORTHO05D000399 8.8e-12 75.9 97 50.5
CANSAT78G1556 Cannabis sativa HOM05D000520 ORTHO05D000399 1.1e-11 75.5 96 67.7
Aqoxy2G03274 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 1.5e-11 75.1 99 47.5
arahy.Tifrunner.gnm1.ann1.KQD4NT Arachis hypogaea HOM05D000520 ORTHO05D000399 1.5e-11 75.1 97 56.7
Cc03_g03140 Coffea canephora HOM05D000520 ORTHO05D000399 2.6e-11 74.3 68 58.8
CsaV3_1G039090 Cucumis sativus L. HOM05D000520 ORTHO05D000399 3.3e-11 73.9 93 48.4
Glyma.15G104400 Glycine max HOM05D000520 ORTHO05D000399 3.3e-11 73.9 70 60.0
ClCG03G016850 Citrullus lanatus HOM05D000520 ORTHO05D000399 4.4e-11 73.6 93 49.5
Duzib151G0073 Durio zibethinus HOM05D000520 ORTHO05D000399 4.4e-11 73.6 100 48.0
ECA234G3541 Erigeron canadensis HOM05D000520 ORTHO05D000399 4.4e-11 73.6 63 66.7
ECA247G2183 Erigeron canadensis HOM05D002957 ORTHO05D007941 7.4e-11 72.8 101 52.5
Prupe.1G151700 Prunus persica HOM05D000520 ORTHO05D000399 9.7e-11 72.4 417 38.4
TAR365G1251 Trochodendron aralioides HOM05D000520 ORTHO05D000399 9.7e-11 72.4 102 53.9
Haze_00959 Corylus avellana HOM05D000520 ORTHO05D000399 1.7e-10 71.6 99 52.5
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 2.2e-10 71.2 68 69.1
VMungo0540G0465 Vigna mungo HOM05D000520 ORTHO05D000399 2.2e-10 71.2 70 58.6
Rhsim04G0206800 Rhododendron simsii HOM05D000520 ORTHO05D000399 2.8e-10 70.9 68 66.2
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 2.8e-10 70.9 93 46.2
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.8e-10 70.9 105 54.3
HanXRQChr12g0359381 Helianthus annuus HOM05D000520 ORTHO05D000399 3.7e-10 70.5 65 64.6
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 3.7e-10 70.5 69 62.3
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 4.8e-10 70.1 443 48.8
Nn1g02168 Nelumbo nucifera HOM05D000520 ORTHO05D000399 4.8e-10 70.1 99 44.4
Oeu042424.1 Olea europaea HOM05D000520 ORTHO05D000399 6.3e-10 69.7 72 65.3
Hund12193 Selenicereus undatus HOM05D000520 ORTHO05D000399 6.3e-10 69.7 73 56.2
SGA_v2.0_scaffold237G43821 Striga asiatica HOM05D000520 ORTHO05D000399 6.3e-10 69.7 99 59.6
Dinv40265 Davidia involucrata HOM05D000520 ORTHO05D000399 8.2e-10 69.3 98 43.9
Migut.G00268 Erythranthe guttata HOM05D000520 ORTHO05D000399 8.2e-10 69.3 69 69.6
Phvul.003G092500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 8.2e-10 69.3 65 61.5
Sed0003129 Sechium edule HOM05D000520 ORTHO05D000399 8.2e-10 69.3 72 50.0
VMungo1215G0488 Vigna mungo HOM05D000520 ORTHO05D000399 8.2e-10 69.3 65 61.5
Hma1.2p1_0511F.1_g169070 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.1e-09 68.9 68 60.3
Actinidia40190 Actinidia chinensis HOM05D000520 ORTHO05D000399 1.4e-09 68.6 99 45.5
Potri.005G036300 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.4e-09 68.6 75 52.0
Potri.008G202800 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.8e-09 68.2 99 58.6
vmacro15303 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 1.8e-09 68.2 69 58.0
Actinidia00088 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.1e-09 67.4 70 58.6
CSS0016617 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 3.1e-09 67.4 68 63.2
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 5.3e-09 66.6 70 67.1
Ca_00641_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 9.1e-09 65.9 73 56.2
Potri.013G025300 Populus trichocarpa HOM05D000520 ORTHO05D000399 9.1e-09 65.9 76 53.9
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 9.1e-09 65.9 95 44.2
Lalb_Chr12g0196211 Lupinus albus HOM05D000520 ORTHO05D000399 1.6e-08 65.1 73 54.8
HanXRQChr10g0310421 Helianthus annuus HOM05D000520 ORTHO05D000399 2.0e-08 64.7 66 68.2
Psat4g031280 Pisum sativum HOM05D000520 ORTHO05D000399 2.0e-08 64.7 104 57.7
SalBow5G3417 Salvia bowleyana HOM05D000520 ORTHO05D000399 2.0e-08 64.7 68 66.2
SalBow5G3772 Salvia bowleyana HOM05D000520 ORTHO05D000399 2.0e-08 64.7 68 66.2
TPR.G31404 Trifolium pratense HOM05D000520 ORTHO05D000399 2.0e-08 64.7 99 43.4
vmacro08281 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 2.0e-08 64.7 69 63.8
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 3.5e-08 63.9 71 53.5
CiPaw.07G015400 Carya illinoinensis HOM05D000520 ORTHO05D000399 4.5e-08 63.5 94 46.8
Gorai.006G054000 Gossypium raimondii HOM05D000520 ORTHO05D000399 4.5e-08 63.5 64 65.6
Hma1.2p1_0081F.1_g042480 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 4.5e-08 63.5 66 59.1
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 7.7e-08 62.8 93 43.0
MSTRG.10015 Avicennia marina HOM05D000520 ORTHO05D000399 1.0e-07 62.4 97 51.5
AUR62038213 Chenopodium quinoa HOM05D000520 ORTHO05D000399 1.0e-07 62.4 67 55.2
Medtr2g022240 Medicago truncatula HOM05D000520 ORTHO05D000399 1.0e-07 62.4 96 49.0
MSTRG.3996 Avicennia marina HOM05D000520 ORTHO05D000399 1.3e-07 62.0 70 65.7
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 1.3e-07 62.0 75 45.3
Actinidia08516 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.2e-07 61.2 68 52.9
BcaB04g19213 Brassica carinata HOM05D000520 ORTHO05D000399 2.2e-07 61.2 418 39.2
DCAR_024583 Daucus carota HOM05D000520 ORTHO05D000399 2.2e-07 61.2 68 51.5
Dinv38396 Davidia involucrata HOM05D000520 ORTHO05D000399 2.2e-07 61.2 51 64.7
Medtr2g022250 Medicago truncatula HOM05D000520 ORTHO05D000399 2.2e-07 61.2 73 54.8
Atru.chr13.1890 Acer truncatum HOM05D000520 ORTHO05D000399 3.8e-07 60.5 77 44.2
ClCG06G005820 Citrullus lanatus HOM05D000520 ORTHO05D000399 5.0e-07 60.1 97 42.3
Thecc.04G222100 Theobroma cacao HOM05D000520 ORTHO05D000399 6.5e-07 59.7 99 52.5
CiPaw.01G160300 Carya illinoinensis HOM05D000520 ORTHO05D000399 8.5e-07 59.3 66 56.1
SGA_v2.0_scaffold166G38370 Striga asiatica HOM05D000520 ORTHO05D000399 8.5e-07 59.3 65 58.5
Psat1g183400 Pisum sativum HOM05D000520 ORTHO05D000399 1.1e-06 58.9 64 57.8
Atru.chr4.2566 Acer truncatum HOM05D000520 ORTHO05D000399 1.5e-06 58.5 63 65.1
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 1.9e-06 58.2 91 42.9
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 2.5e-06 57.8 94 40.4
QL06p004190 Quercus lobata HOM05D000520 ORTHO05D000399 2.5e-06 57.8 101 56.4
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.5e-06 57.8 98 55.1
BcaC05g30053 Brassica carinata HOM05D000520 ORTHO05D000399 3.2e-06 57.4 70 50.0
COL.COLO4_21650 Corchorus olitorius HOM05D000520 ORTHO05D000399 3.2e-06 57.4 99 47.5
Medtr4g117140 Medicago truncatula HOM05D000520 ORTHO05D000399 3.2e-06 57.4 63 60.3
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 4.2e-06 57.0 95 49.5
Medtr4g117220 Medicago truncatula HOM05D000520 ORTHO05D000399 5.5e-06 56.6 63 58.7
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 5.5e-06 56.6 61 59.0
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 5.5e-06 56.6 94 39.4
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 7.2e-06 56.2 64 50.0
Sabra05G0036800 Salix brachista HOM05D000520 ORTHO05D000399 7.2e-06 56.2 67 50.7
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 9.4e-06 55.8 62 51.6
PSO407G0131 Papaver somniferum HOM05D000520 ORTHO05D000399 9.4e-06 55.8 62 51.6


User provided reference genes

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