Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 1.3e-27 125.9 77 100.0
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 3.9e-24 114.4 77 94.8
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 8.7e-24 113.2 75 74.7
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 8.7e-24 113.2 75 74.7
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 5.7e-23 110.5 75 76.0
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 6.3e-22 107.1 75 70.7
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 6.3e-22 107.1 75 70.7
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 6.3e-22 107.1 75 70.7
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 8.2e-22 106.7 75 85.3
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 8.2e-22 106.7 77 89.6
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 2.4e-21 105.1 75 72.0
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 9.0e-21 103.2 75 66.7
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 1.7e-19 99.0 77 68.8
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 5.1e-16 87.4 47 85.1
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 5.7e-15 84.0 59 67.8
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.3e-14 82.8 44 84.1
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 1.3e-14 82.8 75 58.7
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 2.8e-14 81.6 46 78.3
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 2.8e-14 81.6 44 86.4
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 4.8e-14 80.9 46 80.4
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 4.8e-14 80.9 46 80.4
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 4.8e-14 80.9 46 80.4
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 8.2e-14 80.1 44 81.8
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 8.2e-14 80.1 46 80.4
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.1e-13 79.7 44 79.5
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.1e-13 79.7 44 79.5
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 1.1e-13 79.7 46 76.1
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 1.4e-13 79.3 47 74.5
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 1.4e-13 79.3 43 81.4
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 1.4e-13 79.3 44 81.8
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 1.4e-13 79.3 46 78.3
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 1.8e-13 79.0 47 76.6
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 1.8e-13 79.0 44 81.8
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.8e-13 79.0 43 79.1
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 1.8e-13 79.0 46 76.1
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 3.1e-13 78.2 44 79.5
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 4.1e-13 77.8 44 79.5
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 5.3e-13 77.4 46 78.3
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 5.3e-13 77.4 46 73.9
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 9.1e-13 76.6 46 76.1
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 9.1e-13 76.6 46 73.9
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 9.1e-13 76.6 43 79.1
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 1.2e-12 76.3 72 51.4
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 1.5e-12 75.9 44 77.3
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 1.5e-12 75.9 48 77.1
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 1.5e-12 75.9 46 71.7
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 1.5e-12 75.9 46 71.7
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 3.4e-12 74.7 44 72.7
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 3.4e-12 74.7 57 64.9
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 3.4e-12 74.7 46 73.9
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 3.4e-12 74.7 46 71.7
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 3.4e-12 74.7 48 70.8
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 3.4e-12 74.7 46 71.7
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 3.4e-12 74.7 44 72.7
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 4.5e-12 74.3 48 70.8
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 4.5e-12 74.3 46 71.7
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 4.5e-12 74.3 46 71.7
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 4.5e-12 74.3 46 71.7
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 5.9e-12 73.9 44 72.7
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 7.7e-12 73.6 44 75.0
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 1.0e-11 73.2 47 70.2
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 1.3e-11 72.8 46 71.7
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 1.7e-11 72.4 46 69.6
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 2.2e-11 72.0 47 68.1
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 2.2e-11 72.0 46 65.2
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 3.8e-11 71.2 45 75.6
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 5.0e-11 70.9 44 70.5
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 5.0e-11 70.9 44 70.5
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 6.5e-11 70.5 34 91.2
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 8.5e-11 70.1 45 73.3
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 1.1e-10 69.7 44 65.9
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 1.1e-10 69.7 44 68.2
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 1.4e-10 69.3 44 65.9
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 1.4e-10 69.3 44 63.6
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 1.9e-10 68.9 46 63.0
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 5.5e-10 67.4 44 68.2
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 5.5e-10 67.4 44 65.9
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 2.1e-09 65.5 65 53.8
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 2.7e-09 65.1 47 61.7
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.7e-09 65.1 44 65.9
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 1.0e-08 63.2 32 84.4
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 3.0e-08 61.6 56 53.6
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 3.0e-08 61.6 53 54.7
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 3.9e-08 61.2 35 71.4
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 1.1e-07 59.7 46 63.0
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 1.1e-07 59.7 47 48.9
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 1.5e-07 59.3 31 80.6
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 2.0e-07 58.9 34 70.6
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 2.0e-07 58.9 34 70.6
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 1.7e-06 55.8 48 60.4
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 2.8e-06 55.1 31 74.2


User provided reference genes

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