Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.0e-58 228.8 107 100.0
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.0e-58 228.8 107 100.0
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.0e-58 228.8 107 100.0
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 99.1
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.8e-58 227.3 107 99.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.8e-58 227.3 107 99.1
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-57 226.1 107 98.1
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.3e-57 226.1 107 98.1
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.7e-57 225.7 107 97.2
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 2.9e-57 224.9 107 97.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 4.9e-57 224.2 107 96.3
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 4.9e-57 224.2 107 96.3
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 6.4e-57 223.8 104 99.0
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.7e-54 215.7 101 99.0
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.7e-54 215.7 101 99.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 8.6e-54 213.4 107 90.7
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 5.6e-53 210.7 106 90.6
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 5.6e-53 210.7 106 91.5
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.2e-52 209.5 106 89.6
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.2e-52 209.5 106 90.6
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.6e-52 209.1 106 89.6
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.6e-52 209.1 105 91.4
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.5e-50 202.6 107 86.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 2.6e-50 201.8 107 85.0
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 4.4e-50 201.1 107 86.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.3e-49 199.5 106 86.8
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 4.9e-49 197.6 107 84.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.9e-49 197.6 106 84.9
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.4e-49 197.2 107 83.2
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 8.3e-49 196.8 107 86.0
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 8.3e-49 196.8 105 86.7
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 83.2
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.4e-48 195.3 107 85.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.2e-48 194.9 106 84.9
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 82.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.1e-48 194.5 106 84.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 4.1e-48 194.5 107 83.2
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 5.4e-48 194.1 107 83.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.4e-48 194.1 107 82.2
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 7.1e-48 193.7 107 84.1
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 7.1e-48 193.7 106 84.9
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 83.2
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.6e-47 192.6 107 83.2
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 81.3
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 82.2
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 4.6e-47 191.0 105 83.8
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 81.3
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 79.4
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 81.3
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 82.2
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 80.4
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 80.4
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 3.9e-46 188.0 107 79.4
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 81.3
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 81.3
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.5e-45 186.0 107 78.5
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 80.4
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 80.4
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 80.4
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 81.3
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.9e-45 185.7 105 81.0
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 81.9
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.3e-45 184.5 105 78.1
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 5.6e-45 184.1 105 80.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 9.5e-45 183.3 105 77.1
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-44 183.0 104 79.8
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 77.6
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.1e-44 182.2 105 77.1
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 3.6e-44 181.4 105 80.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.7e-44 181.0 106 78.3
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.7e-44 181.0 105 77.1
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 4.7e-44 181.0 107 75.7
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.7e-44 181.0 105 80.0
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 8.1e-44 180.3 107 77.6
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 76.6
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 75.2
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 75.2
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 79.0
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 3.1e-43 178.3 107 72.9
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 77.4
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 75.0
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.9
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.0
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.0
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.8e-43 177.2 104 76.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 72.9
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 73.8
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 77.7
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 78.1
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 76.2
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 72.0
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 74.3
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 74.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 3.4e-42 174.9 101 78.2
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 73.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 75.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 75.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 74.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.4e-42 174.5 103 76.7
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 73.1
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.4e-42 174.5 103 75.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 72.0
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 7.6e-42 173.7 104 74.0
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 7.6e-42 173.7 107 70.1
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.9e-42 173.3 97 81.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 71.4
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.9
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 74.8
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.3e-41 172.9 110 70.9
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 71.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 74.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 72.1
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.2e-41 172.2 105 74.3
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 6.4e-41 170.6 105 73.3
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 70.2
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.1e-40 169.9 107 72.0
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.1e-40 169.9 105 72.4
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.1e-40 169.9 105 73.3
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 5.4e-40 167.5 109 70.6
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 70.1
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 70.5
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-39 166.4 97 77.3
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.1e-39 165.6 97 76.3
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.5e-39 164.9 106 69.8
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 71.4
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.3e-38 162.9 105 70.5
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.7e-38 162.5 108 70.4
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 68.3
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 72.1
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 8.6e-38 160.2 104 71.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.5e-37 159.5 105 65.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 4.3e-37 157.9 97 68.0
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 5.6e-37 157.5 105 65.7
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 7.3e-37 157.1 101 67.3
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.6e-36 154.8 86 76.7
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 4.7e-36 154.5 87 81.6
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.2e-36 154.1 169 50.3
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.1e-35 153.3 88 75.0
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.1e-35 153.3 80 88.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.4e-32 141.0 104 62.5
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.0e-30 136.7 102 59.8
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.3e-30 136.3 94 63.8
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 76 75.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.5e-29 132.9 100 61.0
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 3.3e-29 131.7 95 60.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.4e-27 126.3 106 54.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 4.0e-27 124.8 103 56.3
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 9.0e-27 123.6 82 67.1
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-24 116.7 73 74.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.9e-24 115.9 95 48.4
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 6.0e-23 110.9 63 82.5
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.8e-20 102.1 92 48.9
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 6.2e-20 100.9 67 68.7
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.8e-19 99.4 63 71.4
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.8e-19 99.4 71 63.4
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 2.4e-19 99.0 59 78.0
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 5.8e-18 94.4 69 65.2
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 4.9e-17 91.3 60 68.3
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 4.2e-16 88.2 90 42.2
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 4.2e-16 88.2 54 72.2
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 5.5e-16 87.8 63 65.1
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.3e-16 87.0 55 67.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.6e-15 86.3 53 73.6
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.9e-15 84.0 47 80.9
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 7.9e-15 84.0 106 46.2
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 6.7e-14 80.9 44 79.5
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 6.7e-14 80.9 65 60.0
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.5e-13 79.7 41 78.0
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 1.3e-06 56.6 87 34.5


User provided reference genes

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