Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G29250 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 5.2e-159 564.3 278 100.0
AL6G29230 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 5.4e-140 501.1 278 87.4
Carub.0004s1486 Capsella rubella HOM05D008365 ORTHO05D011149 5.4e-108 394.8 279 68.1
CARHR215270 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.6e-107 393.3 277 68.6
AL7G22480 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.1e-104 382.9 272 69.5
Carub.0008s0192 Capsella rubella HOM05D008365 ORTHO05D011149 5.8e-102 374.8 279 68.1
AT4G29770 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 5.4e-100 368.2 268 67.9
AL7G22500 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.8e-95 353.2 282 64.2
AL7G22490 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 3.4e-94 349.0 270 64.4
AT4G29760 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.9e-92 343.2 281 61.6
Sp7g27580 Schrenkiella parvula HOM05D008365 ORTHO05D011149 2.9e-85 319.3 266 61.7
BcaB03g12656 Brassica carinata HOM05D008365 ORTHO05D011149 4.3e-81 305.4 266 58.6
A08p19110 Brassica napus HOM05D008365 ORTHO05D011149 3.1e-79 299.3 268 58.6
BraA08t33873Z Brassica rapa HOM05D008365 ORTHO05D011149 5.3e-79 298.5 268 58.6
Carub.0004s1487 Capsella rubella HOM05D008365 ORTHO05D011149 1.9e-73 280.0 262 56.1
Thhalv10027444m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.6e-72 276.9 271 54.6
Thhalv10026005m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 8.2e-72 274.6 260 53.8
CARHR251110 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.8e-71 273.5 252 60.7
BcaC01g01143 Brassica carinata HOM05D008365 ORTHO05D011149 5.9e-70 268.5 266 53.8
A08p19120 Brassica napus HOM05D008365 ORTHO05D011149 1.9e-68 263.5 265 53.2
C03p88570 Brassica napus HOM05D008365 ORTHO05D011149 2.1e-67 260.0 251 56.6
C03p88560 Brassica napus HOM05D008365 ORTHO05D011149 2.3e-66 256.5 288 49.0
BcaB03g12655 Brassica carinata HOM05D008365 ORTHO05D011149 3.9e-66 255.8 269 48.0
BcaC09g51862 Brassica carinata HOM05D008365 ORTHO05D011149 6.7e-66 255.0 264 53.0
A07p02810 Brassica napus HOM05D008365 ORTHO05D011149 1.3e-61 240.7 260 46.9
BraA07t28079Z Brassica rapa HOM05D008365 ORTHO05D011149 1.3e-61 240.7 260 46.9
BraA08t33874Z Brassica rapa HOM05D008365 ORTHO05D011149 2.5e-60 236.5 267 46.8
BolC1t00807H Brassica oleracea HOM05D008365 ORTHO05D011149 3.6e-59 232.6 249 53.0
A01p07560 Brassica napus HOM05D008365 ORTHO05D011149 5.7e-57 225.3 264 47.7
AT5G18065 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 2.8e-56 223.0 126 85.7
C01p08200 Brassica napus HOM05D008365 ORTHO05D011149 3.1e-55 219.5 249 51.0
C03p88590 Brassica napus HOM05D008365 ORTHO05D011149 3.1e-55 219.5 267 44.6
A08p19130 Brassica napus HOM05D008365 ORTHO05D011149 1.5e-54 217.2 267 44.2
Thhalv10011766m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.7e-53 213.8 276 46.7
AT5G18040 Arabidopsis thaliana HOM05D008365 ORTHO05D081110 1.9e-52 210.3 198 58.1
CARHR163030 Cardamine hirsuta HOM05D008365 ORTHO05D014862 4.7e-51 205.7 249 47.0
AL1G54760 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 1.4e-50 204.1 250 46.4
BraA01t00699Z Brassica rapa HOM05D008365 ORTHO05D011149 1.4e-50 204.1 249 47.8
Carub.0001s4052 Capsella rubella HOM05D008365 ORTHO05D014862 3.7e-48 196.1 257 46.7
CARHR237670 Cardamine hirsuta HOM05D008365 ORTHO05D011149 2.4e-47 193.4 260 43.8
AL1G61110 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 2.9e-45 186.4 251 45.0
AT1G48180 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 1.6e-43 180.6 253 42.3
Carub.0001s4054 Capsella rubella HOM05D008365 ORTHO05D014862 1.6e-43 180.6 248 44.4
Carub.0001s4053 Capsella rubella HOM05D008365 ORTHO05D014862 6.8e-42 175.3 250 42.0
AL1G59580 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 2.6e-41 173.3 250 43.6
CARHR063260 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.7e-40 170.6 249 41.0
BcaNung02965 Brassica carinata HOM05D008365 ORTHO05D011149 1.4e-39 167.5 188 50.0
CARHR063700 Cardamine hirsuta HOM05D008365 ORTHO05D014862 3.1e-39 166.4 256 37.9
CARHR063690 Cardamine hirsuta HOM05D008365 ORTHO05D014862 4.1e-39 166.0 245 40.8
CARHR263650 Cardamine hirsuta HOM05D008365 ORTHO05D014862 7.0e-39 165.2 241 41.5
CARHR063300 Cardamine hirsuta HOM05D008365 ORTHO05D116364 1.4e-26 124.4 123 51.2
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 1.0e-21 108.2 240 32.1
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 1.0e-21 108.2 240 32.1
BolC3t21165H Brassica oleracea HOM05D008365 ORTHO05D011149 1.0e-21 108.2 129 45.0
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 2.3e-21 107.1 238 32.4
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 2.3e-21 107.1 238 32.4
AT1G51670 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 2.9e-21 106.7 169 42.6
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 7.3e-20 102.1 245 31.4
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 1.6e-19 100.9 247 29.6
CARHR237830 Cardamine hirsuta HOM05D008365 ORTHO05D017520 1.7e-16 90.9 242 31.8
CARHR063270 Cardamine hirsuta HOM05D008365 ORTHO05D116001 8.3e-16 88.6 84 56.0
Carub.0007s2333 Capsella rubella HOM05D000344 ORTHO05D003292 2.4e-15 87.0 244 28.3
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 2.0e-14 84.0 248 27.8
AL7G36450 Arabidopsis lyrata HOM05D013859 ORTHO05D018433 2.7e-14 83.6 229 28.8
AL7G22840 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.3e-13 81.3 267 28.1
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 3.9e-13 79.7 244 28.3
C01p09880 Brassica napus HOM05D008615 ORTHO05D011779 4.3e-12 76.3 246 25.2
BolC1t00951H Brassica oleracea HOM05D008615 ORTHO05D011779 4.3e-12 76.3 246 25.2
BcaC09g52204 Brassica carinata HOM05D008615 ORTHO05D011779 9.5e-12 75.1 247 25.5
BraA01t00798Z Brassica rapa HOM05D008615 ORTHO05D011779 1.6e-11 74.3 246 24.8
C01p09160 Brassica napus HOM05D000574 ORTHO05D004834 8.9e-10 68.6 185 24.9
BolC1t00907H Brassica oleracea HOM05D000574 ORTHO05D004834 8.9e-10 68.6 185 24.9
Thhalv10000684m.g Eutrema salsugineum HOM05D008365 ORTHO05D017520 1.5e-09 67.8 220 26.8
Carub.0007s1099 Capsella rubella HOM05D008615 ORTHO05D011779 2.0e-09 67.4 218 30.3
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 2.6e-09 67.0 185 24.3
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 2.6e-09 67.0 185 24.3
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 7.5e-09 65.5 159 28.9
C01p09790 Brassica napus HOM05D008615 ORTHO05D011779 7.5e-09 65.5 232 27.2
BolC1t00941H Brassica oleracea HOM05D008615 ORTHO05D011779 7.5e-09 65.5 232 27.2
AL1G49360 Arabidopsis lyrata HOM05D011295 ORTHO05D014420 1.7e-08 64.3 172 29.1
AL4G38030 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.7e-08 64.3 120 31.7
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 1.7e-08 64.3 227 23.3
C02p06790 Brassica napus HOM05D013859 ORTHO05D018433 1.7e-08 64.3 211 24.6
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 2.2e-08 63.9 243 22.2
A02p02550 Brassica napus HOM05D013859 ORTHO05D018433 2.2e-08 63.9 252 24.6
BcaC09g52217 Brassica carinata HOM05D008615 ORTHO05D011779 2.9e-08 63.5 229 27.1
BcaC03g13485 Brassica carinata HOM05D013859 ORTHO05D018433 3.7e-08 63.2 128 30.5
A03p58490 Brassica napus HOM05D008615 ORTHO05D021443 4.9e-08 62.8 175 27.4
AT1G22080 Arabidopsis thaliana HOM05D011295 ORTHO05D014420 1.9e-07 60.8 166 30.1
C02p06960 Brassica napus HOM05D013859 ORTHO05D018433 2.4e-07 60.5 128 30.5
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 3.2e-07 60.1 242 25.2
C02p06850 Brassica napus HOM05D013859 ORTHO05D018433 7.1e-07 58.9 126 30.2
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.6e-06 57.8 198 25.8
BcaC07g39853 Brassica carinata HOM05D008615 ORTHO05D011779 1.6e-06 57.8 187 24.6
BcaC08g44545 Brassica carinata HOM05D000331 ORTHO05D027779 7.8e-06 55.5 94 34.0


User provided reference genes

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