Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 1.1e-83 313.5 201 100.0
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 2.6e-67 259.2 201 88.6
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 5.0e-63 245.0 205 82.4
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 3.6e-53 212.2 211 63.0
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 5.8e-51 204.9 207 58.0
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 7.5e-51 204.5 206 55.8
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 9.8e-51 204.1 206 55.3
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 3.7e-50 202.2 206 55.3
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 3.7e-50 202.2 206 55.3
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 3.2e-49 199.1 203 74.9
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 4.6e-48 195.3 207 53.6
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 2.3e-47 193.0 207 53.1
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 8.6e-47 191.0 201 54.2
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 9.5e-46 187.6 201 53.2
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 1.6e-45 186.8 201 53.2
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 1.4e-44 183.7 201 52.2
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 1.4e-44 183.7 201 52.2
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 7.8e-40 167.9 136 64.0
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 6.8e-36 154.8 121 71.1
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 2.6e-35 152.9 121 71.1
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 2.6e-35 152.9 121 71.1
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 2.6e-35 152.9 121 71.1
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 2.6e-35 152.9 121 71.1
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 1.0e-31 141.0 199 41.7
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 3.9e-15 85.9 145 38.6
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 3.3e-14 82.8 144 37.5
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 3.3e-14 82.8 138 37.7
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 4.3e-14 82.4 140 36.4
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 7.3e-14 81.6 141 36.2
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 2.1e-13 80.1 144 33.3
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 6.2e-13 78.6 141 36.9
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 6.2e-13 78.6 138 37.7
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 8.1e-13 78.2 137 35.8
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.1e-12 77.8 140 34.3
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 1.8e-12 77.0 139 34.5
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 9.0e-12 74.7 140 33.6
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 1.5e-11 73.9 139 35.3
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 1.5e-11 73.9 146 33.6
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 2.0e-11 73.6 144 34.7
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 3.4e-11 72.8 138 33.3
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 3.4e-11 72.8 66 51.5
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 4.5e-11 72.4 138 31.9
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 4.5e-11 72.4 138 34.1
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 5.8e-11 72.0 140 36.4
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 1.7e-10 70.5 153 29.4
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 2.2e-10 70.1 154 34.4
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.2e-10 70.1 145 33.8
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 2.2e-10 70.1 145 31.0
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 3.8e-10 69.3 140 33.6
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 3.8e-10 69.3 63 49.2
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 4.9e-10 68.9 144 31.9
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 4.9e-10 68.9 146 30.1
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 6.4e-10 68.6 145 33.8
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 6.4e-10 68.6 141 32.6
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 8.4e-10 68.2 70 48.6
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 1.4e-09 67.4 115 38.3
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 1.9e-09 67.0 141 34.8
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.2e-09 66.2 145 33.1
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 4.2e-09 65.9 147 34.0
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 7.1e-09 65.1 147 34.0
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 9.3e-09 64.7 138 29.7
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 2.1e-08 63.5 88 40.9
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.1e-08 63.5 147 32.0
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 3.5e-08 62.8 144 28.5
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 3.5e-08 62.8 105 32.4
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 4.6e-08 62.4 66 40.9
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 6.0e-08 62.0 68 42.6
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 6.0e-08 62.0 127 33.9
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 6.0e-08 62.0 66 40.9
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 7.9e-08 61.6 72 37.5
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.0e-07 61.2 144 27.1
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 1.3e-07 60.8 137 29.2
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.3e-07 60.1 135 31.1
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 3.0e-07 59.7 117 35.0
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 3.9e-07 59.3 63 42.9
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 3.9e-07 59.3 69 37.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 8.7e-07 58.2 144 26.4
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 8.7e-07 58.2 62 46.8
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 8.7e-07 58.2 69 37.7
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 1.5e-06 57.4 141 27.7
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.5e-06 57.4 148 29.7
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 1.5e-06 57.4 134 29.9
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 4.3e-06 55.8 141 30.5
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.3e-06 55.8 141 33.3
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 5.6e-06 55.5 144 29.9
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 7.4e-06 55.1 143 27.3
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 7.4e-06 55.1 147 26.5
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 7.4e-06 55.1 144 31.2


User provided reference genes

Program Settings