Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.0e-235 819.7 414 100.0
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.6e-223 778.5 416 95.2
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.8e-198 694.9 420 84.0
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 9.3e-197 690.3 417 86.1
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-188 663.3 418 81.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 3.3e-186 655.2 414 82.1
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.3e-186 655.2 415 81.2
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-184 650.2 415 80.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.4e-184 649.0 415 80.5
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 5.3e-184 647.9 408 82.1
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 5.3e-184 647.9 408 82.1
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 2.0e-183 646.0 408 82.1
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.6e-183 645.6 415 80.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.6e-183 645.6 415 80.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 5.0e-182 641.3 413 80.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 5.3e-176 621.3 382 83.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.0e-171 607.1 416 75.2
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 8.2e-169 597.4 390 79.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 9.1e-168 594.0 417 73.4
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.3e-147 526.2 371 70.4
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 6.3e-145 518.1 411 64.7
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.1e-144 515.8 388 67.0
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.6e-143 513.5 352 71.0
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 3.5e-143 512.3 403 64.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.5e-143 511.9 388 66.8
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.5e-142 508.1 348 71.0
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.5e-141 506.9 387 66.4
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 5.5e-141 505.0 350 70.6
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.4e-141 504.2 348 70.7
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.0e-139 499.2 344 70.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.0e-139 498.8 387 65.1
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 4.0e-139 498.8 335 70.1
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 4.0e-139 498.8 376 67.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-138 497.3 369 67.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.0e-138 496.5 352 69.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.6e-138 496.1 359 68.5
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 9.8e-138 494.2 349 70.5
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.7e-137 492.3 343 71.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.7e-137 492.3 351 67.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.9e-137 491.9 344 70.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 6.3e-137 491.5 349 69.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 6.3e-137 491.5 368 67.4
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 8.3e-137 491.1 335 71.9
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 8.3e-137 491.1 335 70.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.1e-136 490.7 335 72.8
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.4e-136 490.3 358 67.3
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.4e-136 489.6 350 68.0
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.1e-136 489.2 335 72.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.1e-136 489.2 335 72.5
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 5.4e-136 488.4 263 92.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.2e-135 487.3 344 69.8
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.7e-135 486.1 395 62.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.0e-134 484.2 349 67.0
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.9e-134 482.6 349 67.6
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 3.8e-134 482.3 349 67.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.1e-133 480.7 350 66.9
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.3e-133 479.2 347 67.4
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.3e-133 479.2 349 67.3
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.3e-133 479.2 344 67.7
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 9.5e-133 477.6 341 69.2
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 6.1e-132 474.9 333 67.9
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.0e-131 474.2 337 68.5
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.4e-131 473.8 329 68.1
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.4e-131 473.8 351 65.2
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.8e-131 473.4 349 66.8
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 8.9e-131 471.1 353 65.4
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.2e-130 470.7 320 71.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.5e-130 470.3 339 67.3
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.0e-130 469.9 338 66.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.0e-130 469.9 336 66.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 4.4e-130 468.8 324 69.1
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.3e-129 467.2 324 69.1
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 3.7e-129 465.7 362 62.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 8.3e-129 464.5 348 65.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.1e-128 464.2 378 61.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 4.1e-128 462.2 353 62.3
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 9.2e-128 461.1 378 59.8
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-127 460.7 353 62.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-127 460.7 353 62.3
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 5.9e-127 458.4 386 61.4
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 7.8e-127 458.0 402 58.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 7.8e-127 458.0 353 62.6
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.7e-126 456.8 341 65.7
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.0e-126 456.1 400 57.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.1e-125 454.1 350 62.6
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.3e-125 452.6 349 63.0
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.8e-124 449.5 345 63.8
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 8.0e-124 448.0 352 60.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.0e-123 447.6 348 61.2
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.2e-123 445.3 339 62.5
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.5e-122 443.7 339 64.6
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.4e-122 442.6 407 56.8
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 7.5e-122 441.4 321 68.5
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.2e-119 434.1 338 62.7
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.0e-119 433.3 410 54.9
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 3.9e-118 429.1 350 63.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.9e-117 426.8 429 52.4
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.5e-114 417.2 348 58.0
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.3e-113 414.1 268 74.6
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 6.0e-111 405.2 292 69.5
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 7.8e-111 404.8 299 66.2
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.0e-110 404.4 331 61.0
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.3e-110 403.3 268 71.6
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 3.3e-109 399.4 357 57.4
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.3e-109 399.4 232 89.7
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.3e-109 399.4 281 69.8
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 6.4e-105 385.2 290 67.9
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.9e-104 383.6 318 61.9
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 2.1e-103 380.2 373 52.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.7e-103 379.8 316 58.2
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.9e-101 373.6 556 40.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 6.2e-100 368.6 298 62.8
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 9.9e-98 361.3 350 51.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 4.8e-92 342.4 353 52.4
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 4.0e-91 339.3 316 53.8
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.3e-91 339.0 320 53.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.5e-90 337.4 362 49.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.3e-88 328.2 328 51.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 6.2e-84 315.5 228 68.9
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.5e-77 294.3 220 59.1
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.7e-76 289.7 237 59.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.6e-74 283.5 233 60.1
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-72 278.1 322 48.1
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 3.3e-69 266.5 208 63.9
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-67 261.5 171 70.2
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 3.1e-67 260.0 192 69.3
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 5.3e-67 259.2 241 56.8
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 7.6e-66 255.4 213 62.4
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.0e-62 243.4 243 52.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 3.1e-59 233.4 119 90.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 5.7e-53 212.6 224 52.2
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.2e-41 174.1 301 35.9
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.4e-38 164.9 149 52.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 5.2e-38 162.9 310 31.6
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.8e-35 154.5 93 74.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 3.2e-32 143.7 337 30.9
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 6.8e-30 136.0 84 76.2
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.0e-22 112.1 112 47.3
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.0e-17 95.5 80 66.2
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 5.0e-17 93.2 86 48.8
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.2e-12 77.8 49 71.4
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.4e-11 75.1 188 29.3


User provided reference genes

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