Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.7e-37 158.7 74 100.0
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 2.5e-36 154.8 74 95.9
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 1.1e-34 149.4 74 91.9
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 2.4e-34 148.3 74 89.2
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 2.6e-33 144.8 74 87.8
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 1.9e-31 138.7 72 83.3
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 2.7e-30 134.8 67 91.0
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 4.6e-30 134.0 66 92.4
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 4.6e-30 134.0 66 92.4
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 4.6e-30 134.0 66 92.4
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 7.8e-30 133.3 73 80.8
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 7.8e-30 133.3 73 80.8
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 7.8e-30 133.3 73 80.8
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 7.8e-30 133.3 73 80.8
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 7.8e-30 133.3 73 80.8
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.3e-29 132.5 73 80.8
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 1.3e-29 132.5 73 80.8
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 1.3e-29 132.5 73 80.8
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 1.3e-29 132.5 73 80.8
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 1.3e-29 132.5 71 78.9
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 1.7e-29 132.1 73 79.5
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 2.3e-29 131.7 69 84.1
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 3.0e-29 131.3 73 79.5
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 8.7e-29 129.8 74 75.7
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 1.1e-28 129.4 73 79.5
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 1.1e-28 129.4 71 78.9
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 1.5e-28 129.0 73 78.1
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.5e-28 129.0 71 80.3
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 1.5e-28 129.0 72 75.0
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 3.3e-28 127.9 60 91.7
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 3.3e-28 127.9 73 76.7
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 3.3e-28 127.9 71 78.9
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 3.3e-28 127.9 71 73.2
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 3.3e-28 127.9 71 73.2
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 4.3e-28 127.5 72 75.0
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 5.6e-28 127.1 71 74.6
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 73.6
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 1.6e-27 125.6 73 75.3
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 2.1e-27 125.2 71 74.6
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 2.8e-27 124.8 72 72.2
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 4.8e-27 124.0 73 78.1
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 4.8e-27 124.0 71 76.1
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 8.1e-27 123.2 71 69.0
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 8.1e-27 123.2 69 76.8
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.1e-26 122.9 74 70.3
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 2.4e-26 121.7 72 69.4
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.4e-26 121.7 74 70.3
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 4.0e-26 120.9 69 76.8
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 5.3e-26 120.6 71 70.4
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 5.3e-26 120.6 71 70.4
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 5.3e-26 120.6 70 72.9
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 6.9e-26 120.2 69 75.4
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 6.9e-26 120.2 71 71.8
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 6.9e-26 120.2 71 73.2
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 6.9e-26 120.2 71 71.8
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 6.9e-26 120.2 69 72.5
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 6.9e-26 120.2 69 72.5
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 9.0e-26 119.8 71 70.4
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 9.0e-26 119.8 71 70.4
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 9.0e-26 119.8 71 70.4
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 1.2e-25 119.4 70 68.6
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 1.2e-25 119.4 73 68.5
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 1.5e-25 119.0 71 70.4
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 2.0e-25 118.6 74 67.6
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 2.6e-25 118.2 74 68.9
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 3.4e-25 117.9 71 67.6
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 3.4e-25 117.9 71 66.2
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 3.4e-25 117.9 71 70.4
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 3.4e-25 117.9 71 69.0
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 3.4e-25 117.9 71 70.4
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 5.8e-25 117.1 71 71.8
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 5.8e-25 117.1 71 71.8
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 7.6e-25 116.7 74 66.2
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 7.6e-25 116.7 71 69.0
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 7.6e-25 116.7 66 78.8
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 9.9e-25 116.3 69 71.0
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 9.9e-25 116.3 71 69.0
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 9.9e-25 116.3 71 69.0
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.3e-24 115.9 71 64.8
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 1.3e-24 115.9 71 69.0
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 1.7e-24 115.5 71 66.2
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 1.7e-24 115.5 71 69.0
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 2.2e-24 115.2 71 67.6
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 2.2e-24 115.2 71 66.2
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 2.2e-24 115.2 71 66.2
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 2.2e-24 115.2 71 69.0
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 2.9e-24 114.8 71 69.0
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 3.8e-24 114.4 71 69.0
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.8e-24 114.4 74 63.5
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 4.9e-24 114.0 71 67.6
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 1.1e-23 112.8 77 64.9
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.1e-23 112.8 74 63.5
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.1e-23 112.8 74 63.5
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.4e-23 112.5 74 62.2
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.9e-23 112.1 71 66.2
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.9e-23 112.1 71 66.2
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.9e-23 112.1 71 66.2
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.4e-23 111.7 71 63.4
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.2e-23 111.3 62 75.8
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 3.2e-23 111.3 69 68.1
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 4.2e-23 110.9 71 63.4
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 4.2e-23 110.9 74 60.8
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 9.3e-23 109.8 71 64.8
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.7e-22 108.2 64 65.6
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.7e-22 108.2 64 65.6
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.7e-22 108.2 71 63.4
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.7e-22 108.2 71 63.4
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 2.7e-22 108.2 71 63.4
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 4.6e-22 107.5 61 75.4
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 1.3e-21 105.9 72 62.5
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 6.6e-21 103.6 71 63.4
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 6.6e-21 103.6 69 62.3
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 8.7e-21 103.2 61 75.4
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 8.7e-21 103.2 69 62.3
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.3e-20 101.3 71 57.7
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 8.1e-19 96.7 52 75.0
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 1.1e-18 96.3 61 65.6
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 1.4e-18 95.9 64 65.6
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 3.1e-18 94.7 69 56.5
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.6e-17 91.7 51 72.5
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 2.7e-14 81.6 58 60.3
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 2.9e-08 61.6 69 42.0
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 9.3e-07 56.6 25 88.0
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 3.5e-06 54.7 70 38.6
Cre03.g207100 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 4.6e-06 54.3 71 35.2


User provided reference genes

Program Settings