Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 1.5e-281 972.2 496 100.0
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.0e-254 882.1 528 88.1
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 3.0e-242 841.6 496 87.7
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 2.3e-218 762.3 501 77.4
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 3.6e-203 711.8 506 74.3
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.4e-202 709.9 505 74.3
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 1.1e-199 700.3 512 75.2
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 3.5e-198 695.3 510 74.3
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 5.9e-198 694.5 511 74.8
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 3.2e-196 688.7 510 74.9
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 5.5e-196 688.0 517 73.5
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 5.2e-194 681.4 511 73.8
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.0e-165 587.4 509 61.5
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 4.8e-131 472.2 518 50.2
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 3.8e-128 462.6 506 48.2
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 1.4e-127 460.7 511 48.1
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 7.9e-126 454.9 513 48.1
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 2.3e-125 453.4 509 48.3
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 6.7e-125 451.8 513 48.3
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 7.4e-124 448.4 511 48.1
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 1.4e-122 444.1 510 47.8
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 3.4e-121 439.5 520 46.2
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 5.5e-119 432.2 502 46.4
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.1e-119 431.8 479 48.2
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 3.5e-118 429.5 531 46.1
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 4.6e-118 429.1 509 46.0
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 4.6e-118 429.1 508 46.5
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 7.9e-118 428.3 514 45.3
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 1.6e-115 420.6 507 46.4
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 8.2e-115 418.3 507 46.2
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 1.5e-113 414.1 512 45.1
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.5e-113 414.1 507 46.0
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 1.5e-113 414.1 506 46.4
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 2.0e-113 413.7 508 47.6
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.6e-113 411.8 472 47.2
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 5.5e-111 405.6 512 46.1
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 3.6e-110 402.9 507 46.7
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 1.8e-109 400.6 460 47.2
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 3.9e-109 399.4 505 44.0
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 5.7e-108 395.6 508 44.7
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 7.4e-108 395.2 507 45.2
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 4.8e-107 392.5 513 44.4
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.4e-106 391.0 500 42.0
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 1.8e-106 390.6 503 45.3
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 3.1e-106 389.8 503 44.1
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 3.4e-105 386.3 641 38.4
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 4.5e-105 386.0 515 46.6
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 1.0e-104 384.8 513 44.4
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.7e-104 384.0 508 45.1
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 1.2e-102 377.9 509 44.8
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 4.6e-102 375.9 515 43.5
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.3e-100 369.8 468 44.9
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 7.4e-100 368.6 516 43.8
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 1.4e-98 364.4 499 42.3
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 5.9e-97 359.0 506 42.3
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.7e-96 357.5 502 41.0
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 5.0e-96 355.9 507 40.0
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 2.5e-95 353.6 499 41.5
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 3.3e-92 343.2 510 40.2
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 4.8e-91 339.3 485 40.4
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 1.1e-90 338.2 508 41.1
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 1.4e-90 337.8 512 41.2
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 7.0e-90 335.5 457 43.5
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 1.7e-88 330.9 448 45.3
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.7e-88 330.9 500 39.2
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 2.5e-87 327.0 511 39.5
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 9.4e-87 325.1 502 38.4
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 9.4e-87 325.1 499 40.9
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 9.4e-87 325.1 502 40.6
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 2.1e-86 323.9 410 42.4
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 8.0e-86 322.0 348 50.0
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 8.8e-85 318.5 468 40.4
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 2.0e-84 317.4 511 38.2
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 1.2e-81 308.1 448 44.2
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 6.1e-78 295.8 527 34.7
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 1.4e-77 294.7 511 38.0
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 2.6e-76 290.4 876 27.6
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 3.4e-76 290.0 655 32.8
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 7.5e-76 288.9 503 36.4
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 1.4e-74 284.6 499 37.3
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 8.6e-72 275.4 398 43.5
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 9.5e-71 271.9 408 40.9
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 1.2e-68 265.0 406 37.7
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 6.3e-67 259.2 371 39.9
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 2.5e-63 247.3 457 36.3
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 5.6e-63 246.1 365 38.4
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 2.3e-61 240.7 536 30.2
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 1.7e-59 234.6 270 47.8
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 1.3e-56 224.9 310 42.3
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 1.1e-55 221.9 269 53.2
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.6e-46 191.4 306 39.5
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 2.8e-46 190.7 545 28.3
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 2.6e-44 184.1 279 37.6
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 4.4e-44 183.3 341 38.7
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 6.4e-43 179.5 264 40.2
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 4.1e-42 176.8 333 36.6
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 4.3e-39 166.8 444 30.4
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 6.2e-38 162.9 144 56.2
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 5.4e-34 149.8 136 67.6
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 2.3e-32 144.4 172 45.3
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 6.6e-32 142.9 138 51.4
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 4.3e-31 140.2 510 24.9
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 7.3e-31 139.4 129 67.4
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 1.6e-30 138.3 277 33.9
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 4.0e-29 133.7 264 37.9
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 6.9e-29 132.9 130 51.5
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 1.2e-28 132.1 140 55.0
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 1.2e-28 132.1 140 55.0
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 6.4e-27 126.3 115 60.0
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 6.4e-27 126.3 115 60.0
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 6.4e-27 126.3 115 60.0
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.9e-26 124.8 113 52.2
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 4.6e-25 120.2 136 45.6
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 1.3e-24 118.6 575 25.0
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.3e-24 117.9 133 46.6
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 5.1e-24 116.7 246 31.3
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 6.2e-22 109.8 130 43.8
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 1.7e-19 101.7 136 44.9
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 7.1e-18 96.3 145 38.6
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 8.1e-14 82.8 143 35.0
BcaB01g04934 Brassica carinata HOM05D005725 ORTHO05D093362 2.2e-11 74.7 63 68.3
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 7.1e-10 69.7 90 46.7
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 3.0e-08 64.3 65 47.7
SEGI_16346 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 3.9e-08 63.9 121 38.0
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 6.7e-08 63.2 171 28.7
SHI12772 Sapria himalayana HOM05D005725 ORTHO05D007531 4.3e-07 60.5 80 33.8


User provided reference genes

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