Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.4e-63 246.1 121 100.0
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-52 209.9 121 85.1
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.8e-47 192.6 123 80.5
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-46 189.9 122 80.3
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.7e-46 187.6 124 79.8
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.2e-45 185.7 129 78.3
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-44 181.0 129 76.0
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 5.4e-44 181.0 129 76.0
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 9.1e-44 180.3 129 76.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.0e-39 166.8 121 73.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.8e-38 160.2 125 71.2
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 6.3e-37 157.5 115 75.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 4.7e-32 141.4 124 61.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 6.1e-32 141.0 122 60.7
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.5e-30 136.3 120 60.8
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 4.4e-30 134.8 122 59.0
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 5.7e-30 134.4 124 61.3
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 9.8e-30 133.7 119 58.8
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.7e-29 132.9 120 60.0
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.7e-29 132.9 120 60.0
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 3.7e-29 131.7 121 60.3
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 6.4e-29 131.0 125 57.6
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 8.3e-29 130.6 122 58.2
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.8e-28 129.4 121 60.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 2.4e-28 129.0 122 55.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 2.4e-28 129.0 122 55.7
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 3.2e-28 128.6 122 55.7
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 4.1e-28 128.3 122 54.9
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.2e-27 126.7 130 57.7
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.0e-27 125.9 122 56.6
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.0e-27 125.9 124 56.5
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 6.6e-26 120.9 122 54.1
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 4.3e-25 118.2 126 52.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.8e-23 112.8 129 49.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 8.9e-23 110.5 130 48.5
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.0e-22 109.4 129 46.5
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.6e-22 109.0 115 48.7
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 3.4e-22 108.6 127 47.2
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.4e-22 108.2 124 47.6
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.7e-21 106.3 126 45.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.2e-21 105.9 87 55.2
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.9e-21 105.5 136 45.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 6.4e-21 104.4 126 47.6
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.1e-20 103.6 86 57.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.2e-20 102.1 134 44.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.1e-20 101.7 129 41.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.1e-20 101.7 129 41.9
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 4.1e-20 101.7 129 41.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 9.2e-20 100.5 106 47.2
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.0e-19 99.4 130 46.2
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.7e-19 99.0 126 42.1
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.7e-19 99.0 124 46.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.5e-19 98.6 131 47.3
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 3.5e-19 98.6 93 51.6
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 7.8e-19 97.4 124 46.8
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.0e-18 97.1 128 44.5
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.3e-18 96.7 125 45.6
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.7e-18 96.3 86 52.3
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.3e-18 95.9 130 45.4
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.3e-18 95.9 123 45.5
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-18 95.5 128 43.8
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-18 95.5 127 44.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-18 95.5 127 44.1
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.9e-18 95.1 120 49.2
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 6.6e-18 94.4 125 46.4
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.6e-18 94.4 94 53.2
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 8.6e-18 94.0 127 44.1
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-17 93.6 124 48.4
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.1e-17 93.6 104 46.2
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.5e-17 93.2 137 40.1
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.9e-17 92.8 87 54.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.9e-17 92.8 124 46.8
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.5e-17 92.4 130 46.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 2.5e-17 92.4 102 47.1
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 3.3e-17 92.0 131 42.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.3e-17 92.0 126 46.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.3e-17 92.0 127 44.1
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.3e-17 91.7 123 47.2
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.6e-17 91.3 124 46.8
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.3e-17 90.9 85 55.3
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 9.5e-17 90.5 120 45.0
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 9.5e-17 90.5 91 56.0
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.5e-17 90.5 126 46.0
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-16 90.1 128 45.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.2e-16 90.1 124 43.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.2e-16 90.1 122 44.3
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.6e-16 89.7 133 43.6
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.6e-16 89.7 126 42.1
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.6e-16 89.7 126 45.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.6e-16 89.7 135 40.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.1e-16 89.4 129 45.7
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.1e-16 89.4 111 42.3
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.1e-16 89.4 121 42.1
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.1e-16 89.4 85 52.9
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 4.7e-16 88.2 90 52.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.7e-16 88.2 121 43.8
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 4.7e-16 88.2 121 44.6
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.7e-16 88.2 120 44.2
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 6.2e-16 87.8 90 47.8
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 8.1e-16 87.4 123 42.3
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 8.1e-16 87.4 122 42.6
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.1e-15 87.0 87 49.4
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.1e-15 87.0 127 43.3
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.4e-15 86.7 126 41.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 127 42.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.4e-15 86.7 112 43.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.8e-15 86.3 88 51.1
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.3e-15 85.9 86 53.5
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.3e-15 85.9 122 43.4
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 2.3e-15 85.9 129 41.9
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 3.1e-15 85.5 83 51.8
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-15 84.7 89 47.2
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-15 84.7 89 47.2
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-15 84.7 89 47.2
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-15 84.7 89 47.2
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 5.2e-15 84.7 119 45.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.2e-15 84.7 113 44.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.8e-15 84.3 113 42.5
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 8.9e-15 84.0 126 42.1
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 8.9e-15 84.0 88 51.1
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.2e-14 83.6 85 51.8
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.2e-14 83.6 85 51.8
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-14 83.2 117 42.7
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.5e-14 83.2 82 50.0
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.5e-14 83.2 131 42.0
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.5e-14 83.2 117 39.3
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.0e-14 82.8 106 46.2
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.0e-14 82.8 126 40.5
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.6e-14 82.4 139 40.3
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.6e-14 82.4 124 43.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.4e-14 82.0 117 42.7
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.4e-14 82.0 86 50.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.4e-14 82.0 115 42.6
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 4.4e-14 81.6 113 42.5
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 7.5e-14 80.9 84 53.6
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.8e-14 80.5 121 43.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.3e-13 80.1 131 42.7
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-13 80.1 103 45.6
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.2e-13 79.3 136 41.9
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.2e-13 79.3 131 40.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.9e-13 79.0 134 38.8
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.7e-13 78.6 120 40.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.7e-13 78.6 86 50.0
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.7e-13 78.6 100 45.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.9e-13 78.2 127 38.6
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 4.9e-13 78.2 98 51.0
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 6.4e-13 77.8 128 39.8
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.4e-13 77.8 90 53.3
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 8.3e-13 77.4 91 48.4
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.1e-12 77.0 82 47.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-12 76.6 118 39.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.4e-12 74.7 114 40.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.4e-12 74.7 130 36.9
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.4e-12 74.7 93 44.1
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.2e-12 73.9 118 35.6
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.2e-12 73.9 118 33.1
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.2e-11 73.6 120 40.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 115 46.1
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.6e-11 73.2 124 35.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-11 72.8 111 42.3
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.1e-11 72.8 114 46.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.6e-11 71.6 83 54.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.0e-11 71.2 110 46.4
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.0e-11 71.2 81 44.4
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.0e-10 70.5 129 38.8
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-10 70.1 87 44.8
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.3e-10 69.3 117 36.8
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 2.3e-10 69.3 67 49.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.3e-10 69.3 83 45.8
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.1e-10 68.2 79 46.8
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.1e-09 67.0 47 59.6
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.1e-09 67.0 101 42.6
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.5e-09 66.6 82 43.9
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.9e-09 66.2 85 44.7
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.3e-09 64.3 84 41.7
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.3e-09 64.3 117 36.8
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-08 63.5 95 38.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.2e-08 61.2 117 41.9
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 89 39.3
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-07 60.5 106 35.8
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.4e-07 60.1 46 54.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.3e-07 59.3 84 39.3
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.3e-07 59.3 81 35.8
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 5.2e-07 58.2 94 42.6
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.6e-06 55.8 89 37.1


User provided reference genes

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