Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.4e-121 438.3 218 100.0
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.9e-82 307.4 176 84.7
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.9e-80 302.4 187 80.2
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-76 289.3 210 72.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.4e-71 271.6 188 73.4
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 2.1e-67 259.6 224 62.5
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-62 243.8 216 61.6
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 2.2e-56 223.0 217 55.3
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.2e-43 177.9 216 46.3
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-40 170.2 194 47.9
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-39 167.5 211 47.9
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 4.6e-38 162.2 233 41.6
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 7.9e-38 161.4 213 46.5
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.8e-37 160.2 212 45.8
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.5e-36 157.1 232 40.1
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-36 157.1 222 43.7
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.5e-36 156.4 128 65.6
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 4.3e-36 155.6 206 43.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 9.7e-36 154.5 232 37.9
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 8.2e-35 151.4 194 44.8
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 8.2e-35 151.4 194 44.8
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.4e-34 150.6 161 49.1
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 9.1e-34 147.9 192 44.3
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 1.2e-33 147.5 191 45.0
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-33 145.2 157 48.4
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 5.9e-33 145.2 206 39.3
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 5.9e-33 145.2 192 43.8
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 7.7e-33 144.8 192 44.3
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-32 143.3 165 42.4
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-31 141.0 157 43.3
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-31 141.0 157 43.3
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-31 140.6 178 41.0
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-31 140.2 157 42.0
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 5.5e-31 138.7 178 40.4
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 9.4e-31 137.9 215 38.6
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.2e-30 137.5 211 41.7
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-30 135.6 211 34.1
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-30 135.6 178 40.4
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-30 135.6 178 40.4
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-29 133.7 212 37.7
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-29 132.5 201 39.8
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 6.7e-29 131.7 180 40.0
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-28 130.2 156 43.6
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-28 129.8 231 36.4
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.6e-28 129.8 174 39.7
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.4e-28 128.3 202 38.6
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.8e-27 126.3 202 38.1
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-27 125.2 179 39.7
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-26 124.4 157 39.5
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-26 124.0 202 40.6
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-26 124.0 157 41.4
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-26 123.2 209 36.8
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 2.4e-26 123.2 234 35.0
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-26 122.9 195 36.4
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-26 122.9 195 36.4
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.1e-26 122.5 192 37.5
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 6.9e-26 121.7 232 36.2
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-25 120.2 155 41.3
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-25 119.8 214 33.6
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-25 119.8 162 40.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-24 117.9 155 41.3
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-24 117.9 163 40.5
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.7e-24 117.1 200 38.0
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.8e-24 115.9 157 38.9
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 3.8e-24 115.9 155 40.6
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-23 112.8 157 43.9
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.4e-23 111.3 201 35.3
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 9.4e-23 111.3 147 40.1
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-22 110.9 158 39.9
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-22 109.4 223 37.2
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 4.7e-22 109.0 161 41.0
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-21 107.1 161 40.4
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.9e-21 105.9 195 35.4
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-20 104.4 201 37.3
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-20 103.6 198 36.9
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.3e-20 102.8 203 33.0
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-19 100.9 154 37.7
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 4.8e-19 99.0 167 37.7
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 8.2e-19 98.2 163 38.7
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-18 97.8 164 37.8
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.0e-18 95.1 157 35.0
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-17 94.0 224 33.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-17 92.8 190 35.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.5e-17 92.4 160 38.8
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 7.7e-17 91.7 187 35.8
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-16 90.9 192 31.8
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-16 90.9 206 35.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 8.5e-16 88.2 164 37.8
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 8.5e-16 88.2 164 37.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.1e-15 87.8 165 37.6
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.5e-15 87.4 152 35.5
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.9e-15 87.0 202 36.1
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.5e-15 86.7 155 38.1
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 9.4e-15 84.7 162 38.3
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.2e-14 84.3 193 33.2
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.6e-14 84.0 226 30.5
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.1e-14 83.6 211 31.8
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-14 83.6 163 34.4
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 2.7e-14 83.2 182 37.4
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 2.7e-14 83.2 228 32.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.7e-14 82.4 162 32.1
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 4.7e-14 82.4 199 34.2
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 4.7e-14 82.4 163 33.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.7e-14 82.4 206 35.0
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 6.1e-14 82.0 167 33.5
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.1e-14 82.0 200 31.0
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.0e-14 81.6 212 31.1
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.0e-13 81.3 223 30.0
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.4e-13 80.9 199 33.7
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.8e-13 80.5 164 31.1
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.0e-13 79.3 227 30.4
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 5.2e-13 79.0 160 35.0
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 6.7e-13 78.6 163 33.7
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 6.7e-13 78.6 163 33.7
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.5e-12 77.4 151 33.8
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 2.0e-12 77.0 159 32.7
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.6e-12 76.6 161 34.2
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 2.6e-12 76.6 74 51.4
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 3.3e-12 76.3 159 33.3
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 4.4e-12 75.9 181 34.3
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 4.4e-12 75.9 159 33.3
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 4.4e-12 75.9 159 33.3
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 4.4e-12 75.9 159 33.3
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 7.5e-12 75.1 216 28.7
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 9.7e-12 74.7 189 30.2
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 1.3e-11 74.3 84 44.0
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.3e-11 74.3 158 36.7
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.7e-11 73.9 194 29.4
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.7e-11 73.9 194 29.4
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-11 73.9 165 32.7
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-11 73.6 179 32.4
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 2.8e-11 73.2 164 32.3
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 2.8e-11 73.2 164 32.3
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 2.8e-11 73.2 164 32.3
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.3e-11 72.0 230 29.6
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 8.2e-11 71.6 174 31.6
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 8.2e-11 71.6 164 32.3
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-10 71.2 123 34.1
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.1e-10 69.7 210 32.9
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.1e-10 69.3 219 27.9
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.1e-10 69.3 83 44.6
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 9.1e-10 68.2 145 33.8
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 9.1e-10 68.2 164 29.9
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.2e-09 67.8 160 31.2
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-09 67.4 82 40.2
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.7e-09 66.6 168 32.1
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.5e-09 66.2 92 39.1
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 7.7e-09 65.1 200 30.5
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.3e-08 64.3 164 31.1
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.2e-08 63.5 103 36.9
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.9e-08 63.2 177 28.2
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.5e-08 61.6 121 34.7
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 8.5e-08 61.6 162 30.9
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.5e-08 61.6 164 31.7
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-07 60.1 96 34.4
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.5e-07 60.1 164 31.1
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-06 56.6 157 29.3
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.7e-06 56.6 164 30.5


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