Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 2.6e-113 412.1 223 100.0
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 4.8e-99 364.8 223 89.2
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 2.7e-94 349.0 217 89.4
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 5.7e-92 341.3 218 87.2
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 6.3e-91 337.8 218 85.3
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 3.1e-90 335.5 218 84.4
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 4.2e-87 325.1 218 81.7
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 6.1e-86 321.2 218 81.7
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 8.0e-86 320.9 215 84.2
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 8.0e-86 320.9 219 81.3
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 3.0e-85 318.9 218 81.2
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 2.0e-84 316.2 218 80.7
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 2.4e-82 309.3 221 79.6
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 1.0e-64 250.8 198 75.3
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 2.5e-63 246.1 194 73.2
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 8.1e-54 214.5 181 67.4
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.2e-52 210.7 198 61.6
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 4.4e-52 208.8 194 61.9
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 3.7e-51 205.7 193 60.6
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 6.4e-51 204.9 190 61.1
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.9e-50 203.4 194 61.9
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 4.1e-50 202.2 182 62.6
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 5.4e-50 201.8 200 62.0
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 7.1e-50 201.4 186 62.9
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 3.5e-49 199.1 194 61.3
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 7.8e-49 198.0 193 60.1
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 1.0e-48 197.6 201 58.7
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 1.3e-48 197.2 184 62.5
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 1.7e-48 196.8 198 57.6
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.7e-48 196.8 194 59.8
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 2.3e-48 196.4 201 59.7
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 3.0e-48 196.1 187 60.4
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 3.0e-48 196.1 199 58.3
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 3.9e-48 195.7 199 58.8
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 3.9e-48 195.7 193 59.6
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 3.9e-48 195.7 193 59.6
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 5.1e-48 195.3 193 59.6
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.1e-48 195.3 196 57.7
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 6.6e-48 194.9 202 57.9
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 1.1e-47 194.1 185 58.9
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 1.2e-46 190.7 185 59.5
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 1.6e-46 190.3 192 57.3
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.6e-46 190.3 200 56.0
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.1e-46 189.9 193 58.0
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.1e-46 189.9 193 58.0
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 6.2e-46 188.3 168 65.5
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 6.2e-46 188.3 195 57.9
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 8.1e-46 188.0 195 57.4
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 1.4e-45 187.2 184 60.3
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 3.1e-45 186.0 195 57.4
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 3.1e-45 186.0 204 55.4
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 2.0e-44 183.3 192 57.8
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 2.0e-44 183.3 196 58.2
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 2.0e-44 183.3 196 58.2
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 3.4e-44 182.6 203 56.2
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 4.4e-44 182.2 193 56.5
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.8e-44 181.8 196 57.7
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 7.6e-44 181.4 230 51.7
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 7.6e-44 181.4 200 58.0
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.3e-43 180.6 184 58.7
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 1.3e-43 180.6 187 55.1
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 1.7e-43 180.3 197 56.3
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 2.2e-43 179.9 197 54.8
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 2.2e-43 179.9 205 52.2
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 2.9e-43 179.5 185 55.7
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 6.4e-43 178.3 202 54.0
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.1e-42 177.6 164 62.2
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 1.4e-42 177.2 167 62.9
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 4.1e-42 175.6 196 53.6
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 2.7e-41 172.9 206 53.4
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 7.8e-41 171.4 201 53.2
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 1.7e-40 170.2 216 49.1
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 2.3e-40 169.9 195 53.8
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 2.3e-40 169.9 195 52.8
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 3.9e-40 169.1 203 52.2
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 3.3e-39 166.0 195 53.3
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 9.6e-39 164.5 284 41.2
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 3.6e-38 162.5 221 48.9
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 4.7e-38 162.2 163 56.4
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 1.1e-37 161.0 199 49.2
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 1.4e-37 160.6 172 55.2
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 1.2e-36 157.5 220 50.0
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 1.5e-36 157.1 213 49.8
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 1.5e-36 157.1 213 49.8
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 1.5e-36 157.1 232 47.4
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 2.0e-36 156.8 182 54.4
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 9.9e-36 154.5 124 64.5
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 2.4e-34 149.8 203 46.8
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 5.4e-34 148.7 120 64.2
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 1.2e-33 147.5 234 46.6
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 1.6e-33 147.1 184 51.6
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 1.3e-32 144.1 251 40.6
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 8.7e-32 141.4 109 66.1
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 9.6e-31 137.9 226 42.9
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 9.6e-31 137.9 119 61.3
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 1.2e-28 131.0 107 75.7
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 1.5e-28 130.6 189 43.9
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 7.6e-28 128.3 121 60.3
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 9.9e-28 127.9 186 45.2
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 1.7e-27 127.1 176 54.0
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 2.2e-27 126.7 214 41.6
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 1.4e-26 124.0 262 39.3
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 4.6e-25 119.0 108 67.6
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 2.3e-24 116.7 108 66.7
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 3.1e-21 106.3 195 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 1.4e-18 97.4 121 45.5
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 9.3e-18 94.7 123 43.9
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 6.0e-17 92.0 61 70.5
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 3.0e-16 89.7 188 40.4
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 1.1e-15 87.8 180 36.1
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 7.4e-15 85.1 247 33.6
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 4.5e-12 75.9 50 72.0
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 4.9e-11 72.4 118 40.7
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 3.2e-10 69.7 44 81.8
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 2.7e-09 66.6 130 43.1
C03p09450 Brassica napus HOM05D006369 ORTHO05D007764 7.9e-09 65.1 57 68.4
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 1.0e-08 64.7 59 54.2
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 5.1e-08 62.4 91 47.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 3.3e-07 59.7 51 58.8
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 8.2e-06 55.1 115 33.9


User provided reference genes

Program Settings