Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.1e-53 213.0 102 100.0
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 2.0e-47 192.2 102 92.2
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 4.4e-47 191.0 104 92.3
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.7e-43 179.1 103 86.4
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.5e-42 176.0 102 82.4
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 1.9e-42 175.6 103 83.5
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 3.2e-42 174.9 103 84.5
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 8.0e-41 170.2 105 80.0
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.8e-40 169.1 102 79.4
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 1.8e-40 169.1 105 78.1
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 6.7e-40 167.2 101 82.2
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 8.8e-40 166.8 109 78.9
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 1.2e-39 166.4 107 79.4
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.5e-39 166.0 111 77.5
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 2.2e-35 152.1 107 69.2
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 2.7e-33 145.2 93 77.4
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 2.7e-33 145.2 93 77.4
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 2.3e-27 125.6 82 76.8
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 2.3e-27 125.6 82 76.8
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.2e-23 113.2 103 57.3
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 4.4e-23 111.3 103 53.4
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.8e-22 108.6 103 54.4
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 3.7e-22 108.2 103 55.3
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.1e-21 106.7 103 54.4
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.4e-21 106.3 103 54.4
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.8e-21 105.9 103 56.3
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 2.4e-21 105.5 103 52.4
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.4e-21 105.5 103 52.4
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 3.1e-21 105.1 103 51.5
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 3.1e-21 105.1 103 52.4
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 5.4e-21 104.4 103 52.4
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 7.0e-21 104.0 106 52.8
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 9.2e-21 103.6 103 53.4
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 9.2e-21 103.6 102 51.0
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.6e-20 102.8 101 51.5
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 2.0e-20 102.4 102 50.0
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 2.0e-20 102.4 106 50.0
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.7e-20 102.1 103 50.5
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.7e-20 102.1 103 50.5
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.5e-20 101.7 103 51.5
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.5e-20 101.7 108 49.1
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 4.5e-20 101.3 102 51.0
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 4.5e-20 101.3 102 51.0
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 5.9e-20 100.9 103 51.5
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 7.8e-20 100.5 102 51.0
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.0e-19 100.1 105 49.5
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.0e-19 100.1 103 50.5
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.7e-19 99.4 103 50.5
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.7e-19 99.4 103 50.5
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 2.3e-19 99.0 48 89.6
Carub.0003s3142 Capsella rubella HOM05D005781 ORTHO05D006835 2.9e-19 98.6 78 64.1
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 1.1e-18 96.7 103 49.5
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.3e-18 95.1 103 52.4
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 4.3e-18 94.7 103 49.5
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 4.3e-18 94.7 100 49.0
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 4.3e-18 94.7 100 49.0
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 5.6e-18 94.4 103 47.6
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 5.6e-18 94.4 103 49.5
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 7.3e-18 94.0 100 48.0
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 7.3e-18 94.0 103 48.5
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 7.3e-18 94.0 98 51.0
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 9.5e-18 93.6 103 47.6
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.2e-17 93.2 103 49.5
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 1.2e-17 93.2 103 47.6
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.6e-17 92.8 103 48.5
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 1.6e-17 92.8 47 85.1
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.1e-17 92.4 103 47.6
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 2.8e-17 92.0 103 46.6
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 2.8e-17 92.0 102 50.0
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 8.0e-17 90.5 102 51.0
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 1.0e-16 90.1 102 47.1
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.4e-16 89.7 103 50.5
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.3e-16 89.0 102 44.1
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 3.0e-16 88.6 103 44.7
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 5.2e-16 87.8 102 46.1
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 6.8e-16 87.4 103 44.7
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 6.8e-16 87.4 105 44.8
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 8.9e-16 87.0 102 46.1
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.2e-15 86.7 102 43.1
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 1.2e-15 86.7 103 43.7
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 1.5e-15 86.3 64 56.2
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.6e-15 85.5 91 48.4
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 5.8e-15 84.3 100 49.0
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 7.5e-15 84.0 103 45.6
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 7.5e-15 84.0 103 43.7
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 7.5e-15 84.0 103 43.7
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 7.5e-15 84.0 103 43.7
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 7.5e-15 84.0 101 41.6
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 7.5e-15 84.0 101 46.5
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 7.5e-15 84.0 64 53.1
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.3e-14 83.2 101 44.6
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.7e-14 82.8 91 46.2
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.7e-14 82.8 103 44.7
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 2.9e-14 82.0 83 53.0
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 2.9e-14 82.0 101 44.6
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 3.7e-14 81.6 101 47.5
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 8.3e-14 80.5 101 43.6
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 8.3e-14 80.5 99 46.5
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 8.3e-14 80.5 105 41.0
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 1.1e-13 80.1 91 47.3
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.4e-13 79.7 91 45.1
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.4e-13 79.7 91 48.4
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.4e-13 79.0 105 49.5
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 5.4e-13 77.8 91 44.0
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 9.2e-13 77.0 91 45.1
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 2.0e-12 75.9 103 45.6
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 3.5e-12 75.1 103 45.6
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 4.6e-12 74.7 139 36.0
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 7.8e-12 73.9 94 42.6
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 1.0e-11 73.6 93 39.8
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.7e-11 72.8 95 42.1
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.7e-11 72.8 51 68.6
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 6.6e-11 70.9 92 43.5
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.9e-10 69.3 93 41.9
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.5e-10 68.9 95 40.0
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.3e-10 68.6 93 39.8
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.3e-10 68.6 52 57.7
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.3e-10 67.4 91 42.9
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 9.5e-10 67.0 63 49.2
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.2e-09 66.6 98 38.8
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.6e-09 66.2 90 38.9
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 3.6e-09 65.1 92 40.2
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 4.7e-09 64.7 91 40.7
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 1.4e-08 63.2 46 58.7
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 1.4e-08 63.2 91 37.4
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 2.3e-08 62.4 80 43.8
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.4e-07 58.2 70 47.1
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 5.8e-07 57.8 61 44.3
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 5.8e-07 57.8 91 37.4
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 7.5e-07 57.4 52 46.2
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 2.9e-06 55.5 86 39.5
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 4.9e-06 54.7 52 44.2
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 6.4e-06 54.3 47 44.7


User provided reference genes

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